def main(): # initialization param = ParamMoco(is_diffusion=True, group_size=3, metric='MI', smooth='1') # Fetch user arguments parser = get_parser() arguments = parser.parse(sys.argv[1:]) param.fname_data = arguments['-i'] param.fname_bvecs = os.path.abspath(arguments['-bvec']) if '-bval' in arguments: param.fname_bvals = os.path.abspath(arguments['-bval']) if '-bvalmin' in arguments: param.bval_min = arguments['-bvalmin'] if '-g' in arguments: param.group_size = arguments['-g'] if '-m' in arguments: param.fname_mask = arguments['-m'] if '-param' in arguments: param.update(arguments['-param']) if '-x' in arguments: param.interp = arguments['-x'] if '-ofolder' in arguments: param.path_out = arguments['-ofolder'] if '-r' in arguments: param.remove_temp_files = int(arguments['-r']) param.verbose = int(arguments.get('-v')) # Update log level sct.init_sct(log_level=param.verbose, update=True) # run moco moco_wrapper(param)
def main(): # initialization param = ParamMoco(group_size=1, metric='MeanSquares', smooth='0') # Fetch user arguments parser = get_parser() arguments = parser.parse_args(args=None if sys.argv[1:] else ['--help']) param.fname_data = arguments.i param.path_out = arguments.ofolder param.remove_temp_files = arguments.r param.interp = arguments.x if arguments.g is not None: param.group_size = arguments.g if arguments.m is not None: param.fname_mask = arguments.m if arguments.param is not None: param.update(arguments.param) param.verbose = int(arguments.v) # Update log level init_sct(log_level=param.verbose, update=True) # run moco moco_wrapper(param)
def main(): # initialization param = ParamMoco(group_size=1, metric='MeanSquares', smooth='0') # Fetch user arguments parser = get_parser() arguments = parser.parse(sys.argv[1:]) param.fname_data = arguments['-i'] if '-g' in arguments: param.group_size = arguments['-g'] if '-m' in arguments: param.fname_mask = arguments['-m'] if '-param' in arguments: param.update(arguments['-param']) if '-x' in arguments: param.interp = arguments['-x'] if '-ofolder' in arguments: param.path_out = arguments['-ofolder'] if '-r' in arguments: param.remove_temp_files = int(arguments['-r']) param.verbose = int(arguments.get('-v')) # Update log level sct.init_sct(log_level=param.verbose, update=True) # run moco moco_wrapper(param)
def main(): # initialization param = ParamMoco(is_diffusion=True, group_size=3, metric='MI', smooth='1') # Fetch user arguments parser = get_parser() arguments = parser.parse_args(args=None if sys.argv[1:] else ['--help']) param.fname_data = arguments.i param.fname_bvecs = os.path.abspath(arguments.bvec) param.fname_bvals = arguments.bval param.bval_min = arguments.bvalmin param.group_size = arguments.g param.fname_mask = arguments.m param.interp = arguments.x param.path_out = arguments.ofolder param.remove_temp_files = arguments.r if arguments.param is not None: param.update(arguments.param) param.verbose = int(arguments.v) # Update log level init_sct(log_level=param.verbose, update=True) # run moco moco_wrapper(param)