def test6(self):
''' output formatting test 3'''
ln1 = 'ATOM 7016 CB SER A1449 -35.964 -34.300 -27.433 1.00100.34 A C'
ln2 = 'ATOM 1 CB SER A1449 -35.964 -34.300 -27.433 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] )
self.assert_( oln == ln2 )
def test4(self):
''' output formatting test 1'''
ln1 = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C\n'
ln2 = 'ATOM 1 CA VAL I 43 32.664-109.147 -0.440 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] )
self.assert_( oln == ln2 )
def test5(self):
''' output formatting test 2'''
ln1 = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N\n'
ln2 = 'ATOM 1 N LEU A1000 -31.768 -60.286 -16.708 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] )
self.assert_( oln == ln2 )
def test6(self):
''' output formatting test 3'''
ln1 = 'ATOM 7016 CB SER A1449 -35.964 -34.300 -27.433 1.00100.34 A C'
ln2 = 'ATOM 1 CB SER A1449 -35.964 -34.300 -27.433 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'],
a['resSeq'], a['x'], a['y'], a['z'])
self.assert_(oln == ln2)
def test5(self):
''' output formatting test 2'''
ln1 = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N\n'
ln2 = 'ATOM 1 N LEU A1000 -31.768 -60.286 -16.708 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'],
a['resSeq'], a['x'], a['y'], a['z'])
self.assert_(oln == ln2)
def test4(self):
''' output formatting test 1'''
ln1 = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C\n'
ln2 = 'ATOM 1 CA VAL I 43 32.664-109.147 -0.440 1.00 23.42\n'
a = parse_pdb_atom_line(ln1)
oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'],
a['resSeq'], a['x'], a['y'], a['z'])
self.assert_(oln == ln2)
def test2b(self):
''' atom parse 3 '''
ln = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N'
d = parse_pdb_atom_line(ln)
self.assert_( d['x'] == -31.768)
self.assert_( d['y'] == -60.286)
self.assert_( d['z'] == -16.708)
self.assert_( d['name'] == ' N ')
self.assert_( d['resSeq'] == 1000)
self.assert_( d['chainID'] == 'A')
def test2(self):
''' atom parse 2 '''
ln = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C'
d = parse_pdb_atom_line(ln)
self.assert_( d['x'] == 32.664)
self.assert_( d['y'] == -109.147)
self.assert_( d['z'] == -0.440)
self.assert_( d['name'] == ' CA ')
self.assert_( d['resSeq'] == 43)
self.assert_( d['chainID'] == 'I')
def test2b(self):
''' atom parse 3 '''
ln = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N'
d = parse_pdb_atom_line(ln)
self.assert_(d['x'] == -31.768)
self.assert_(d['y'] == -60.286)
self.assert_(d['z'] == -16.708)
self.assert_(d['name'] == ' N ')
self.assert_(d['resSeq'] == 1000)
self.assert_(d['chainID'] == 'A')
def test2(self):
''' atom parse 2 '''
ln = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C'
d = parse_pdb_atom_line(ln)
self.assert_(d['x'] == 32.664)
self.assert_(d['y'] == -109.147)
self.assert_(d['z'] == -0.440)
self.assert_(d['name'] == ' CA ')
self.assert_(d['resSeq'] == 43)
self.assert_(d['chainID'] == 'I')
def test1(self):
''' atom parse 1 '''
ln = 'ATOM 1 N VAL A 2 -10.675 -27.377 -28.169 1.00 93.06 A N\n'
d = parse_pdb_atom_line(ln)
self.assert_( d['serial'] == 1)
self.assert_( d['x'] == -10.675)
self.assert_( d['y'] == -27.377)
self.assert_( d['z'] == -28.169)
self.assert_( d['chainID'] == 'A')
self.assert_( d['name'] == ' N ')
self.assert_( d['resSeq'] == 2)
def test1(self):
''' atom parse 1 '''
ln = 'ATOM 1 N VAL A 2 -10.675 -27.377 -28.169 1.00 93.06 A N\n'
d = parse_pdb_atom_line(ln)
self.assert_(d['serial'] == 1)
self.assert_(d['x'] == -10.675)
self.assert_(d['y'] == -27.377)
self.assert_(d['z'] == -28.169)
self.assert_(d['chainID'] == 'A')
self.assert_(d['name'] == ' N ')
self.assert_(d['resSeq'] == 2)
