def test6(self): ''' output formatting test 3''' ln1 = 'ATOM 7016 CB SER A1449 -35.964 -34.300 -27.433 1.00100.34 A C' ln2 = 'ATOM 1 CB SER A1449 -35.964 -34.300 -27.433 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] ) self.assert_( oln == ln2 )
def test4(self): ''' output formatting test 1''' ln1 = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C\n' ln2 = 'ATOM 1 CA VAL I 43 32.664-109.147 -0.440 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] ) self.assert_( oln == ln2 )
def test5(self): ''' output formatting test 2''' ln1 = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N\n' ln2 = 'ATOM 1 N LEU A1000 -31.768 -60.286 -16.708 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z'] ) self.assert_( oln == ln2 )
def test6(self): ''' output formatting test 3''' ln1 = 'ATOM 7016 CB SER A1449 -35.964 -34.300 -27.433 1.00100.34 A C' ln2 = 'ATOM 1 CB SER A1449 -35.964 -34.300 -27.433 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z']) self.assert_(oln == ln2)
def test5(self): ''' output formatting test 2''' ln1 = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N\n' ln2 = 'ATOM 1 N LEU A1000 -31.768 -60.286 -16.708 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z']) self.assert_(oln == ln2)
def test4(self): ''' output formatting test 1''' ln1 = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C\n' ln2 = 'ATOM 1 CA VAL I 43 32.664-109.147 -0.440 1.00 23.42\n' a = parse_pdb_atom_line(ln1) oln = generate_pdb_atom_line(1, a['name'], a['resName'], a['chainID'], a['resSeq'], a['x'], a['y'], a['z']) self.assert_(oln == ln2)
def test2b(self): ''' atom parse 3 ''' ln = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N' d = parse_pdb_atom_line(ln) self.assert_( d['x'] == -31.768) self.assert_( d['y'] == -60.286) self.assert_( d['z'] == -16.708) self.assert_( d['name'] == ' N ') self.assert_( d['resSeq'] == 1000) self.assert_( d['chainID'] == 'A')
def test2(self): ''' atom parse 2 ''' ln = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C' d = parse_pdb_atom_line(ln) self.assert_( d['x'] == 32.664) self.assert_( d['y'] == -109.147) self.assert_( d['z'] == -0.440) self.assert_( d['name'] == ' CA ') self.assert_( d['resSeq'] == 43) self.assert_( d['chainID'] == 'I')
def test2b(self): ''' atom parse 3 ''' ln = 'ATOM 7838 N LEU A1000 -31.768 -60.286 -16.708 1.00103.83 A N' d = parse_pdb_atom_line(ln) self.assert_(d['x'] == -31.768) self.assert_(d['y'] == -60.286) self.assert_(d['z'] == -16.708) self.assert_(d['name'] == ' N ') self.assert_(d['resSeq'] == 1000) self.assert_(d['chainID'] == 'A')
def test2(self): ''' atom parse 2 ''' ln = 'ATOM 18027 CA VAL I 43 32.664-109.147 -0.440 1.00139.76 I C' d = parse_pdb_atom_line(ln) self.assert_(d['x'] == 32.664) self.assert_(d['y'] == -109.147) self.assert_(d['z'] == -0.440) self.assert_(d['name'] == ' CA ') self.assert_(d['resSeq'] == 43) self.assert_(d['chainID'] == 'I')
def test1(self): ''' atom parse 1 ''' ln = 'ATOM 1 N VAL A 2 -10.675 -27.377 -28.169 1.00 93.06 A N\n' d = parse_pdb_atom_line(ln) self.assert_( d['serial'] == 1) self.assert_( d['x'] == -10.675) self.assert_( d['y'] == -27.377) self.assert_( d['z'] == -28.169) self.assert_( d['chainID'] == 'A') self.assert_( d['name'] == ' N ') self.assert_( d['resSeq'] == 2)
def test1(self): ''' atom parse 1 ''' ln = 'ATOM 1 N VAL A 2 -10.675 -27.377 -28.169 1.00 93.06 A N\n' d = parse_pdb_atom_line(ln) self.assert_(d['serial'] == 1) self.assert_(d['x'] == -10.675) self.assert_(d['y'] == -27.377) self.assert_(d['z'] == -28.169) self.assert_(d['chainID'] == 'A') self.assert_(d['name'] == ' N ') self.assert_(d['resSeq'] == 2)