def load_and_translate(self, combine, pythonfile, editor, set_current=True):
"""
Read filename as combine archive, unzip, translate, reconstitute in
Python, and create an editor instance and return it
*Warning* This is loading file, creating editor but not executing
the source code analysis -- the analysis must be done by the editor
plugin (in case multiple editorstack instances are handled)
"""
combine = str(combine)
self.emit(SIGNAL('starting_long_process(QString)'),
_("Loading %s...") % combine)
text, enc = encoding.read(combine)
text = Translatecombine(combine)
zipextloctemp, sbmlloclisttemp, sedmlloclisttemp = manifestsearch(combine)
for i in range(len(text)):
widgeteditor = editor.editorstacks[0]
sedmlfname = os.path.basename(sedmlloclisttemp[i])
finfo = widgeteditor.create_new_editor(os.path.splitext(sedmlfname)[0] + '_phrasedml.py', enc, text[i], set_current, new=True)
index = widgeteditor.data.index(finfo)
widgeteditor._refresh_outlineexplorer(index, update=True)
self.emit(SIGNAL('ending_long_process(QString)'), "")
if widgeteditor.isVisible() and widgeteditor.checkeolchars_enabled \
and sourcecode.has_mixed_eol_chars(text[i]):
name = os.path.basename(pythonfile[:-3] + '_phrasedml.py')
QMessageBox.warning(self, widgeteditor.title,
_("<b>%s</b> contains mixed end-of-line "
"characters.<br>Spyder will fix this "
"automatically.") % name,
QMessageBox.Ok)
widgeteditor.set_os_eol_chars(index)
widgeteditor.is_analysis_done = False
finfo.editor.set_cursor_position('eof')
finfo.editor.insert_text(os.linesep)
return finfo, combine
def load_and_translate(self, sbmlfile, pythonfile, editor, set_current=True):
"""
Read filename as combine archive, unzip, translate, reconstitute in
Python, and create an editor instance and return it
*Warning* This is loading file, creating editor but not executing
the source code analysis -- the analysis must be done by the editor
plugin (in case multiple editorstack instances are handled)
"""
sbmlfile = str(sbmlfile)
self.emit(SIGNAL('starting_long_process(QString)'),
_("Loading %s...") % sbmlfile)
text, enc = encoding.read(sbmlfile)
sbmlstr = te.readFromFile(sbmlfile)
text = "import tellurium as te\n\nr = te.loada('''\n" + str(te.sbmlToAntimony(sbmlstr)) + "''')"
widgeteditor = editor.editorstacks[0]
finfo = widgeteditor.create_new_editor(pythonfile, enc, text, set_current, new=True)
index = widgeteditor.data.index(finfo)
widgeteditor._refresh_outlineexplorer(index, update=True)
self.emit(SIGNAL('ending_long_process(QString)'), "")
if widgeteditor.isVisible() and widgeteditor.checkeolchars_enabled \
and sourcecode.has_mixed_eol_chars(text):
name = os.path.basename(pythonfile)
QMessageBox.warning(self, widgeteditor.title,
_("<b>%s</b> contains mixed end-of-line "
"characters.<br>Spyder will fix this "
"automatically.") % name,
QMessageBox.Ok)
widgeteditor.set_os_eol_chars(index)
widgeteditor.is_analysis_done = False
finfo.editor.set_cursor_position('eof')
finfo.editor.insert_text(os.linesep)
return finfo, sbmlfile
def load_and_translate(self, sedmlfile, pythonfile, editor, set_current=True):
"""
Read filename as SED-ML file, translate it to Python, and
create an editor instance and return it
*Warning* This is loading file, creating editor but not executing
the source code analysis -- the analysis must be done by the editor
plugin (in case multiple editorstack instances are handled)
"""
#sedmlfile = to_text_string(sedmlfile)
sedmlfile = str(sedmlfile)
self.emit(SIGNAL('starting_long_process(QString)'),
_("Loading %s...") % sedmlfile)
text, enc = encoding.read(sedmlfile)
fname = os.path.basename(sedmlfile)
temp = '"End of code generated by Import SED-ML plugin ' + time.strftime("%m/%d/%Y") + '"\n"Extracted from ' + fname + '"\n\n'
text = te.sedmlToPython(sedmlfile) + temp
widgeteditor = editor.editorstacks[0]
finfo = widgeteditor.create_new_editor(pythonfile, enc, text, set_current, new=True)
index = widgeteditor.data.index(finfo)
widgeteditor._refresh_outlineexplorer(index, update=True)
self.emit(SIGNAL('ending_long_process(QString)'), "")
if widgeteditor.isVisible() and widgeteditor.checkeolchars_enabled \
and sourcecode.has_mixed_eol_chars(text):
name = os.path.basename(pythonfile)
QMessageBox.warning(self, widgeteditor.title,
_("<b>%s</b> contains mixed end-of-line "
"characters.<br>Spyder will fix this "
"automatically.") % name,
QMessageBox.Ok)
widgeteditor.set_os_eol_chars(index)
widgeteditor.is_analysis_done = False
finfo.editor.set_cursor_position('eof')
finfo.editor.insert_text(os.linesep)
return finfo, sedmlfile
def load_and_translate(self, combine, pythonfile, editor, set_current=True):
"""
Read filename as combine archive, unzip, translate, reconstitute in
Python, and create an editor instance and return it
*Warning* This is loading file, creating editor but not executing
the source code analysis -- the analysis must be done by the editor
plugin (in case multiple editorstack instances are handled)
"""
combine = str(combine)
self.emit(SIGNAL('starting_long_process(QString)'),
_("Loading %s...") % combine)
text, enc = encoding.read(combine)
text = Translatecombine(combine)
zipextloctemp, sbmlloclisttemp, sedmlloclisttemp = manifestsearch(combine)
for i in range(len(text)):
widgeteditor = editor.editorstacks[0]
sedmlfname = os.path.basename(sedmlloclisttemp[i])
finfo = widgeteditor.create_new_editor(os.path.splitext(sedmlfname)[0] + '.py', enc, text[i], set_current, new=True)
index = widgeteditor.data.index(finfo)
widgeteditor._refresh_outlineexplorer(index, update=True)
self.emit(SIGNAL('ending_long_process(QString)'), "")
if widgeteditor.isVisible() and widgeteditor.checkeolchars_enabled \
and sourcecode.has_mixed_eol_chars(text[i]):
name = os.path.basename(os.path.splitext(sedmlfname)[0] + '.py')
QMessageBox.warning(self, widgeteditor.title,
_("<b>%s</b> contains mixed end-of-line "
"characters.<br>Spyder will fix this "
"automatically.") % name,
QMessageBox.Ok)
widgeteditor.set_os_eol_chars(index)
widgeteditor.is_analysis_done = False
finfo.editor.set_cursor_position('eof')
finfo.editor.insert_text(os.linesep)
return finfo, combine
def load_and_translate(self,
sedmlfile,
pythonfile,
editor,
set_current=True):
"""
Read filename as SED-ML file, translate it to PhrasedML, and
create an editor instance and return it
*Warning* This is loading file, creating editor but not executing
the source code analysis -- the analysis must be done by the editor
plugin (in case multiple editorstack instances are handled)
"""
#sedmlfile = to_text_string(sedmlfile)
sedmlfile = str(sedmlfile)
self.emit(SIGNAL('starting_long_process(QString)'),
_("Loading %s...") % sedmlfile)
text, enc = encoding.read(sedmlfile)
fname = os.path.basename(sedmlfile)
temp = '"End of code generated by Import SED-ML with PhrasedML plugin ' + time.strftime(
'%m/%d/%Y') + '"\n"Extracted from ' + fname + '"'
text = "import tellurium as te\n\nphrasedmlStr = '''" + pl.convertFile(
sedmlfile
) + "'''\n\nte.executeSEDML(te.sedml.tephrasedml.phrasedml.convertString(phrasedmlStr))\n\n" + temp
widgeteditor = editor.editorstacks[0]
finfo = widgeteditor.create_new_editor(pythonfile,
enc,
text,
set_current,
new=True)
index = widgeteditor.data.index(finfo)
widgeteditor._refresh_outlineexplorer(index, update=True)
self.emit(SIGNAL('ending_long_process(QString)'), "")
if widgeteditor.isVisible() and widgeteditor.checkeolchars_enabled \
and sourcecode.has_mixed_eol_chars(text):
name = os.path.basename(pythonfile)
QMessageBox.warning(
self, widgeteditor.title,
_("<b>%s</b> contains mixed end-of-line "
"characters.<br>Spyder will fix this "
"automatically.") % name, QMessageBox.Ok)
widgeteditor.set_os_eol_chars(index)
widgeteditor.is_analysis_done = False
finfo.editor.set_cursor_position('eof')
finfo.editor.insert_text(os.linesep)
return finfo, sedmlfile
