def pp009_vs_healthy_coherence(dpi, bitrate, pics_type, show_first_pic,
n_jobs):
# todo: this example doesn't work
fol = '/home/noam/Videos/mmvt/meg_con/healthy'
fol2 = '/home/noam/Videos/mmvt/meg_con/pp009'
data_to_show_in_graph = ('coherence', 'coherence2')
video_fname = 'pp009_healthy_meg_coh.mp4'
cb_title = ''
ms_before_stimuli, labels_time_dt = 0, 1
time_range = range(11)
ylabels = ['Healthy', 'pp009']
ylim = ()
# xticklabels = ['', 'Risk onset', '', '', '', 'Reward onset', '', '', '', 'Shock?', '']
xticklabels = ['Risk onset', 'Reward onset', 'Shock?']
xticks = range(3)
xlabel = ''
cb_data_type = ''
fps = 10
# duplicate_frames(fol, 30)
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def electrodes_activity(fol,
video_fname,
T,
cb_norm_percs=(3, 97),
cb_min_max=(),
cb_min_max_eq=True,
color_map='BuPu_YlOrRd',
dpi=100,
bitrate=5000,
pics_type='png',
show_first_pic=False,
n_jobs=1):
fol2 = ''
data_to_show_in_graph = ['electrodes'] #, 'stim_sources']
cb_title = 'Electrodes Activity'
ylabels = ['Electrodes Activity']
time_range = np.arange(0, T, 0.001)
xticks = np.arange(0, T + 0.5, 1)
xticklabels = [(xt, str(int(xt))) for xt in xticks][1:]
ylim = () #(0, 10)
xlabel = 'Time(s)'
cb_data_type = 'electrodes'
fps = 10
show_animation = False
overwrite = True
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, cb_norm_percs,
color_map, bitrate, fol2, '', '', '', '', ylim, ylabels,
xticklabels, xlabel, pics_type, show_first_pic,
show_animation, overwrite, n_jobs)
def fMRI_4D_cor_connectivity(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol2 = op.join(MMVT_DIR, 'nmr00698', 'movies', 'labels_connectivity')
fol = op.join(MMVT_DIR, 'nmr00698', 'movies', 'fmri')
data_to_show_in_graph = ('labels_connectivity')
video_fname = 'nmr00698_fmri_4d_cor.mp4'
cb2_title = 'fMRI corr'
cb_title = 'fMRI'
time_range = range(0, 161)
ylim = ()
ylabels = ['Labels corr']
xticks = range(0, 161, 20)
xticklabels = [(xt, str(int(xt * 3 / 60))) for xt in xticks][1:]
xlabel = 'Time (m)'
cb2_data_type = 'labels_connectivity'
cb_data_type = 'fmri'
fps = 5
cb_min_max_eq = True
cb2_min_max_eq = True
color_map = 'BuPu_YlOrRd'
color_map2 = 'BuPu_YlOrRd'
show_animation = False
overwrite = True
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, None,
color_map, bitrate, fol2, cb2_data_type, cb2_title,
cb2_min_max_eq, color_map2, ylim, ylabels, xticklabels,
xlabel, pics_type, show_first_pic, show_animation, overwrite,
n_jobs)
def mg106_electrodes_activity(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = 'I:\\mmvt\\mg106\\figures\\lvf5-6_dt5'
fol2 = ''
data_to_show_in_graph = ['electrodes'] #, 'stim_sources']
video_fname = 'mg106_LVF5-6.mp4'
cb_title = 'Electrodes Activity'
cb_norm_percs = (3, 97)
ylabels = ['Electrodes Activity']
T = 5
time_range = np.arange(0, T, 0.001)
xticks = np.arange(0, T + 0.5, 1)
xticklabels = [(xt, str(int(xt))) for xt in xticks][1:]
ylim = () #(0, 10)
xlabel = 'Time(s)'
cb_data_type = 'electrodes'
cb_min_max_eq = True
color_map = 'BuPu_YlOrRd'
fps = 10
show_animation = False
overwrite = True
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, cb_norm_percs,
color_map, bitrate, fol2, '', '', '', '', ylim, ylabels,
xticklabels, xlabel, pics_type, show_first_pic,
show_animation, overwrite, n_jobs)
def meg(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/cluster/neuromind/npeled/mmvt/ESZC25/movies/movie2'
fol2 = ''
data_to_show_in_graph = ('meg')
video_fname = 'ESZC25.mp4'
cb_title = 'MEG activity'
time_range = range(0, 300)
xticks = range(0, 300, 50)
ylim = ()
ylabels = ['MEG activity']
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def meg_labels(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/movie1'
fol2 = ''
data_to_show_in_graph = ('meg_labels')
video_fname = 'mg78_labels_demo.mp4'
cb_title = 'MEG activity'
time_range = range(2500)
xticks = range(-500, 2500, 500)
ylim = ()
ylabels = ['MEG activity']
xticklabels = []
xlabel = ''
cb_data_type = 'meg_labels'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def fsaverage_ttest(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/fsaverage'
fol2 = ''
data_to_show_in_graph = ('meg')
video_fname = 'fsaverage_meg_ttest.mp4'
cb_title = 'MEG t values'
time_range = range(1000)
xticks = range(0, 1000, 100)
ylim = ()
ylabels = ['MEG t-values']
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg99_stim(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/mg99/lvf4-3_1'
fol2 = ''
data_to_show_in_graph = 'stim'
video_fname = 'mg99_LVF4-3_stim.mp4'
cb_title = 'Electrodes PSD'
ylabels = ['Electrodes PSD']
time_range = np.arange(-1, 1.5, 0.01)
xticks = [-1, -0.5, 0, 0.5, 1]
xticklabels = [(-1, 'stim onset'), (0, 'end of stim')]
ylim = (0, 500)
xlabel = 'Time(s)'
cb_data_type = 'stim'
cb_min_max_eq = False
color_map = 'OrRd'
fps = 10
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg78_electrodes_coherence_meg(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/movie1'
fol2 = '/home/noam/Pictures/mmvt/movie2'
data_to_show_in_graph = ('electrodes', 'coherence')
video_fname = 'mg78_elecs_coh_meg.mp4'
cb_title = 'MEG dSPM difference'
time_range = range(2500)
xticks = range(-500, 2500, 500)
ylim = ()
ylabels = []
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg99_stim_srouces(dpi, bitrate, pics_type, show_first_pic, n_jobs):
root = '/home/noam/Pictures/mmvt/mg99'
fol = op.join(root, 'mg99_stim_lvf4-3_laus250_1_1')
fol2 = op.join(root, 'mg99_stim_lvf4-3_laus250_1_2')
data_to_show_in_graph = ['stim']#, 'stim_sources']
video_fname = 'mg99_LVF4-3_stim_srouces.mp4'
cb_title = 'Electrodes PSD'
ylabels = ['Electrodes PSD']
time_range = np.arange(-1, 2, 0.01)
xticks = [-1.5, -1, -0.5, 0, 0.5, 1]
xticklabels = [(-1, 'stim onset'), (0, 'end of stim')]
ylim = (0, 10)
xlabel = 'Time(s)'
cb_data_type = 'stim'
cb_min_max_eq = False
color_map = 'OrRd'
fps = 10
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def meg(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/cluster/neuromind/npeled/mmvt/ESZC25/movies/movie2'
fol2 = ''
data_to_show_in_graph = ('meg')
video_fname = 'ESZC25.mp4'
cb_title = 'MEG activity'
time_range = range(0, 300)
xticks = range(0, 300, 50)
ylim = ()
ylabels = ['MEG activity']
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def meg_labels(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/movie1'
fol2 = ''
data_to_show_in_graph = ('meg_labels')
video_fname = 'mg78_labels_demo.mp4'
cb_title = 'MEG activity'
time_range = range(2500)
xticks = range(-500, 2500, 500)
ylim = ()
ylabels = ['MEG activity']
xticklabels = []
xlabel = ''
cb_data_type = 'meg_labels'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def fsaverage_ttest(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/fsaverage'
fol2 = ''
data_to_show_in_graph = ('meg')
video_fname = 'fsaverage_meg_ttest.mp4'
cb_title = 'MEG t values'
time_range = range(1000)
xticks = range(0, 1000, 100)
ylim = ()
ylabels = ['MEG t-values']
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def mg99_stim(dpi, bitrate, pics_type, show_first_pic, n_jobs):
fol = '/home/noam/Pictures/mmvt/mg99/lvf4-3_1'
fol2 = ''
data_to_show_in_graph = 'stim'
video_fname = 'mg99_LVF4-3_stim.mp4'
cb_title = 'Electrodes PSD'
ylabels = ['Electrodes PSD']
time_range = np.arange(-1, 1.5, 0.01)
xticks = [-1, -0.5, 0, 0.5, 1]
xticklabels = [(-1, 'stim onset'), (0, 'end of stim')]
ylim = (0, 500)
xlabel = 'Time(s)'
cb_data_type = 'stim'
cb_min_max_eq = False
color_map = 'OrRd'
fps = 10
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def mg99_stim_srouces(dpi, bitrate, pics_type, show_first_pic, n_jobs):
root = '/home/noam/Pictures/mmvt/mg99'
fol = op.join(root, 'mg99_stim_lvf4-3_laus250_1_1')
fol2 = op.join(root, 'mg99_stim_lvf4-3_laus250_1_2')
data_to_show_in_graph = ['stim'] #, 'stim_sources']
video_fname = 'mg99_LVF4-3_stim_srouces.mp4'
cb_title = 'Electrodes PSD'
ylabels = ['Electrodes PSD']
time_range = np.arange(-1, 2, 0.01)
xticks = [-1.5, -1, -0.5, 0, 0.5, 1]
xticklabels = [(-1, 'stim onset'), (0, 'end of stim')]
ylim = (0, 10)
xlabel = 'Time(s)'
cb_data_type = 'stim'
cb_min_max_eq = False
color_map = 'OrRd'
fps = 10
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def mg78_electrodes_coherence_meg(dpi, bitrate, pics_type, show_first_pic,
n_jobs):
fol = '/home/noam/Pictures/mmvt/movie1'
fol2 = '/home/noam/Pictures/mmvt/movie2'
data_to_show_in_graph = ('electrodes', 'coherence')
video_fname = 'mg78_elecs_coh_meg.mp4'
cb_title = 'MEG dSPM difference'
time_range = range(2500)
xticks = range(-500, 2500, 500)
ylim = ()
ylabels = []
xticklabels = []
xlabel = ''
cb_data_type = 'meg'
fps = 10
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type,
data_to_show_in_graph, cb_title, cb_min_max_eq, color_map,
bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type,
show_first_pic, n_jobs)
def pp009_vs_healthy_coherence(dpi, bitrate, pics_type, show_first_pic, n_jobs):
# todo: this example doesn't work
fol = '/home/noam/Videos/mmvt/meg_con/healthy'
fol2 = '/home/noam/Videos/mmvt/meg_con/pp009'
data_to_show_in_graph = ('coherence', 'coherence2')
video_fname = 'pp009_healthy_meg_coh.mp4'
cb_title = ''
ms_before_stimuli, labels_time_dt = 0, 1
time_range = range(11)
ylabels = ['Healthy', 'pp009']
ylim = ()
# xticklabels = ['', 'Risk onset', '', '', '', 'Reward onset', '', '', '', 'Shock?', '']
xticklabels = ['Risk onset','Reward onset','Shock?']
xticks = range(3)
xlabel = ''
cb_data_type = ''
fps = 10
# duplicate_frames(fol, 30)
cb_min_max_eq = True
color_map = 'jet'
create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title,
cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
