def pp009_vs_healthy_coherence(dpi, bitrate, pics_type, show_first_pic, n_jobs): # todo: this example doesn't work fol = '/home/noam/Videos/mmvt/meg_con/healthy' fol2 = '/home/noam/Videos/mmvt/meg_con/pp009' data_to_show_in_graph = ('coherence', 'coherence2') video_fname = 'pp009_healthy_meg_coh.mp4' cb_title = '' ms_before_stimuli, labels_time_dt = 0, 1 time_range = range(11) ylabels = ['Healthy', 'pp009'] ylim = () # xticklabels = ['', 'Risk onset', '', '', '', 'Reward onset', '', '', '', 'Shock?', ''] xticklabels = ['Risk onset', 'Reward onset', 'Shock?'] xticks = range(3) xlabel = '' cb_data_type = '' fps = 10 # duplicate_frames(fol, 30) cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def electrodes_activity(fol, video_fname, T, cb_norm_percs=(3, 97), cb_min_max=(), cb_min_max_eq=True, color_map='BuPu_YlOrRd', dpi=100, bitrate=5000, pics_type='png', show_first_pic=False, n_jobs=1): fol2 = '' data_to_show_in_graph = ['electrodes'] #, 'stim_sources'] cb_title = 'Electrodes Activity' ylabels = ['Electrodes Activity'] time_range = np.arange(0, T, 0.001) xticks = np.arange(0, T + 0.5, 1) xticklabels = [(xt, str(int(xt))) for xt in xticks][1:] ylim = () #(0, 10) xlabel = 'Time(s)' cb_data_type = 'electrodes' fps = 10 show_animation = False overwrite = True create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, cb_norm_percs, color_map, bitrate, fol2, '', '', '', '', ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, show_animation, overwrite, n_jobs)
def fMRI_4D_cor_connectivity(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol2 = op.join(MMVT_DIR, 'nmr00698', 'movies', 'labels_connectivity') fol = op.join(MMVT_DIR, 'nmr00698', 'movies', 'fmri') data_to_show_in_graph = ('labels_connectivity') video_fname = 'nmr00698_fmri_4d_cor.mp4' cb2_title = 'fMRI corr' cb_title = 'fMRI' time_range = range(0, 161) ylim = () ylabels = ['Labels corr'] xticks = range(0, 161, 20) xticklabels = [(xt, str(int(xt * 3 / 60))) for xt in xticks][1:] xlabel = 'Time (m)' cb2_data_type = 'labels_connectivity' cb_data_type = 'fmri' fps = 5 cb_min_max_eq = True cb2_min_max_eq = True color_map = 'BuPu_YlOrRd' color_map2 = 'BuPu_YlOrRd' show_animation = False overwrite = True create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, None, color_map, bitrate, fol2, cb2_data_type, cb2_title, cb2_min_max_eq, color_map2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, show_animation, overwrite, n_jobs)
def mg106_electrodes_activity(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = 'I:\\mmvt\\mg106\\figures\\lvf5-6_dt5' fol2 = '' data_to_show_in_graph = ['electrodes'] #, 'stim_sources'] video_fname = 'mg106_LVF5-6.mp4' cb_title = 'Electrodes Activity' cb_norm_percs = (3, 97) ylabels = ['Electrodes Activity'] T = 5 time_range = np.arange(0, T, 0.001) xticks = np.arange(0, T + 0.5, 1) xticklabels = [(xt, str(int(xt))) for xt in xticks][1:] ylim = () #(0, 10) xlabel = 'Time(s)' cb_data_type = 'electrodes' cb_min_max_eq = True color_map = 'BuPu_YlOrRd' fps = 10 show_animation = False overwrite = True create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, cb_norm_percs, color_map, bitrate, fol2, '', '', '', '', ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, show_animation, overwrite, n_jobs)
def meg(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = '/cluster/neuromind/npeled/mmvt/ESZC25/movies/movie2' fol2 = '' data_to_show_in_graph = ('meg') video_fname = 'ESZC25.mp4' cb_title = 'MEG activity' time_range = range(0, 300) xticks = range(0, 300, 50) ylim = () ylabels = ['MEG activity'] xticklabels = [] xlabel = '' cb_data_type = 'meg' fps = 10 cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def meg_labels(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = '/home/noam/Pictures/mmvt/movie1' fol2 = '' data_to_show_in_graph = ('meg_labels') video_fname = 'mg78_labels_demo.mp4' cb_title = 'MEG activity' time_range = range(2500) xticks = range(-500, 2500, 500) ylim = () ylabels = ['MEG activity'] xticklabels = [] xlabel = '' cb_data_type = 'meg_labels' fps = 10 cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def fsaverage_ttest(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = '/home/noam/Pictures/mmvt/fsaverage' fol2 = '' data_to_show_in_graph = ('meg') video_fname = 'fsaverage_meg_ttest.mp4' cb_title = 'MEG t values' time_range = range(1000) xticks = range(0, 1000, 100) ylim = () ylabels = ['MEG t-values'] xticklabels = [] xlabel = '' cb_data_type = 'meg' fps = 10 cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg99_stim(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = '/home/noam/Pictures/mmvt/mg99/lvf4-3_1' fol2 = '' data_to_show_in_graph = 'stim' video_fname = 'mg99_LVF4-3_stim.mp4' cb_title = 'Electrodes PSD' ylabels = ['Electrodes PSD'] time_range = np.arange(-1, 1.5, 0.01) xticks = [-1, -0.5, 0, 0.5, 1] xticklabels = [(-1, 'stim onset'), (0, 'end of stim')] ylim = (0, 500) xlabel = 'Time(s)' cb_data_type = 'stim' cb_min_max_eq = False color_map = 'OrRd' fps = 10 create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg78_electrodes_coherence_meg(dpi, bitrate, pics_type, show_first_pic, n_jobs): fol = '/home/noam/Pictures/mmvt/movie1' fol2 = '/home/noam/Pictures/mmvt/movie2' data_to_show_in_graph = ('electrodes', 'coherence') video_fname = 'mg78_elecs_coh_meg.mp4' cb_title = 'MEG dSPM difference' time_range = range(2500) xticks = range(-500, 2500, 500) ylim = () ylabels = [] xticklabels = [] xlabel = '' cb_data_type = 'meg' fps = 10 cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg99_stim_srouces(dpi, bitrate, pics_type, show_first_pic, n_jobs): root = '/home/noam/Pictures/mmvt/mg99' fol = op.join(root, 'mg99_stim_lvf4-3_laus250_1_1') fol2 = op.join(root, 'mg99_stim_lvf4-3_laus250_1_2') data_to_show_in_graph = ['stim']#, 'stim_sources'] video_fname = 'mg99_LVF4-3_stim_srouces.mp4' cb_title = 'Electrodes PSD' ylabels = ['Electrodes PSD'] time_range = np.arange(-1, 2, 0.01) xticks = [-1.5, -1, -0.5, 0, 0.5, 1] xticklabels = [(-1, 'stim onset'), (0, 'end of stim')] ylim = (0, 10) xlabel = 'Time(s)' cb_data_type = 'stim' cb_min_max_eq = False color_map = 'OrRd' fps = 10 create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def mg99_stim_srouces(dpi, bitrate, pics_type, show_first_pic, n_jobs): root = '/home/noam/Pictures/mmvt/mg99' fol = op.join(root, 'mg99_stim_lvf4-3_laus250_1_1') fol2 = op.join(root, 'mg99_stim_lvf4-3_laus250_1_2') data_to_show_in_graph = ['stim'] #, 'stim_sources'] video_fname = 'mg99_LVF4-3_stim_srouces.mp4' cb_title = 'Electrodes PSD' ylabels = ['Electrodes PSD'] time_range = np.arange(-1, 2, 0.01) xticks = [-1.5, -1, -0.5, 0, 0.5, 1] xticklabels = [(-1, 'stim onset'), (0, 'end of stim')] ylim = (0, 10) xlabel = 'Time(s)' cb_data_type = 'stim' cb_min_max_eq = False color_map = 'OrRd' fps = 10 create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)
def pp009_vs_healthy_coherence(dpi, bitrate, pics_type, show_first_pic, n_jobs): # todo: this example doesn't work fol = '/home/noam/Videos/mmvt/meg_con/healthy' fol2 = '/home/noam/Videos/mmvt/meg_con/pp009' data_to_show_in_graph = ('coherence', 'coherence2') video_fname = 'pp009_healthy_meg_coh.mp4' cb_title = '' ms_before_stimuli, labels_time_dt = 0, 1 time_range = range(11) ylabels = ['Healthy', 'pp009'] ylim = () # xticklabels = ['', 'Risk onset', '', '', '', 'Reward onset', '', '', '', 'Shock?', ''] xticklabels = ['Risk onset','Reward onset','Shock?'] xticks = range(3) xlabel = '' cb_data_type = '' fps = 10 # duplicate_frames(fol, 30) cb_min_max_eq = True color_map = 'jet' create_movie(time_range, xticks, fol, dpi, fps, video_fname, cb_data_type, data_to_show_in_graph, cb_title, cb_min_max_eq, color_map, bitrate, fol2, ylim, ylabels, xticklabels, xlabel, pics_type, show_first_pic, n_jobs)