Python Standard Examples

Example #1

File: test_standardwriter.py Project: FragIt/fragit-main

class TestStandardWriterModule(unittest.TestCase):

    def setUp(self):
      directories = {'share':''}
      self.molecule = fileToMol("tests/1UAO.pdb")
      self.fragmentation = Fragmentation(self.molecule)
      self.standardwriter = Standard(self.fragmentation, directories)

    def test_defaults(self):
      self.assertEqual(self.standardwriter._nlayers, 1)

    def test_notimplementederror(self):
      self.assertRaises(NotImplementedError, self.standardwriter.writeFile)
      self.assertRaises(NotImplementedError, self.standardwriter.setup)

    def test_setcentralfragmentid(self):
      self.assertRaises(ValueError, self.standardwriter.setCentralFragmentID, -1)

    def test_setbuffermaxdistance(self):
      self.assertRaises(ValueError, self.standardwriter.setBufferMaxDistance, -0.1)

    def test_setboundariesfromstring_two_layers(self):
      layerstring = "1.0"
      nlayers = 2
      self.standardwriter.setBoundariesFromString(layerstring)
      self.assertEqual(self.standardwriter._nlayers, nlayers)
      self.assertEqual(self.standardwriter._boundaries, [1.0])

    def test_setboundariesfromstring_three_layers(self):
      layerstring = "1.0,2.0"
      nlayers = 3
      self.standardwriter.setBoundariesFromString(layerstring)
      self.assertEqual(self.standardwriter._nlayers, nlayers)
      self.assertEqual(self.standardwriter._boundaries, [1.0,2.0])

Example #2

File: test_standardwriter.py Project: shunsunsun/fragit-main

class TestStandardWriterModule(unittest.TestCase):
    def setUp(self):
        directories = {'share': ''}
        self.molecule = fileToMol("tests/1UAO.pdb")
        self.fragmentation = Fragmentation(self.molecule)
        self.standardwriter = Standard(self.fragmentation, directories)

    def test_defaults(self):
        self.assertEqual(self.standardwriter._nlayers, 1)

    def test_notimplementederror(self):
        self.assertRaises(NotImplementedError, self.standardwriter.writeFile)
        self.assertRaises(NotImplementedError, self.standardwriter.setup)

    def test_setcentralfragmentid(self):
        self.assertRaises(ValueError, self.standardwriter.setCentralFragmentID,
                          -1)

    def test_setbuffermaxdistance(self):
        self.assertRaises(ValueError, self.standardwriter.setBufferMaxDistance,
                          -0.1)

    def test_setboundariesfromstring_two_layers(self):
        layerstring = "1.0"
        nlayers = 2
        self.standardwriter.setBoundariesFromString(layerstring)
        self.assertEqual(self.standardwriter._nlayers, nlayers)
        self.assertEqual(self.standardwriter._boundaries, [1.0])

    def test_setboundariesfromstring_three_layers(self):
        layerstring = "1.0,2.0"
        nlayers = 3
        self.standardwriter.setBoundariesFromString(layerstring)
        self.assertEqual(self.standardwriter._nlayers, nlayers)
        self.assertEqual(self.standardwriter._boundaries, [1.0, 2.0])

Example #3

File: test_standardwriter.py Project: FragIt/fragit-main

 def setUp(self):
   directories = {'share':''}
   self.molecule = fileToMol("tests/1UAO.pdb")
   self.fragmentation = Fragmentation(self.molecule)
   self.standardwriter = Standard(self.fragmentation, directories)

Example #4

File: test_standardwriter.py Project: superstar54/fragit-main

 def setUp(self):
   self.molecule = fileToMol("tests/1UAO.pdb")
   self.fragmentation = Fragmentation(self.molecule)
   self.standardwriter = Standard(self.fragmentation)

Example #5

File: test_standardwriter.py Project: shunsunsun/fragit-main

 def setUp(self):
     directories = {'share': ''}
     self.molecule = fileToMol("tests/1UAO.pdb")
     self.fragmentation = Fragmentation(self.molecule)
     self.standardwriter = Standard(self.fragmentation, directories)