class TestStandardWriterModule(unittest.TestCase):
def setUp(self):
directories = {'share':''}
self.molecule = fileToMol("tests/1UAO.pdb")
self.fragmentation = Fragmentation(self.molecule)
self.standardwriter = Standard(self.fragmentation, directories)
def test_defaults(self):
self.assertEqual(self.standardwriter._nlayers, 1)
def test_notimplementederror(self):
self.assertRaises(NotImplementedError, self.standardwriter.writeFile)
self.assertRaises(NotImplementedError, self.standardwriter.setup)
def test_setcentralfragmentid(self):
self.assertRaises(ValueError, self.standardwriter.setCentralFragmentID, -1)
def test_setbuffermaxdistance(self):
self.assertRaises(ValueError, self.standardwriter.setBufferMaxDistance, -0.1)
def test_setboundariesfromstring_two_layers(self):
layerstring = "1.0"
nlayers = 2
self.standardwriter.setBoundariesFromString(layerstring)
self.assertEqual(self.standardwriter._nlayers, nlayers)
self.assertEqual(self.standardwriter._boundaries, [1.0])
def test_setboundariesfromstring_three_layers(self):
layerstring = "1.0,2.0"
nlayers = 3
self.standardwriter.setBoundariesFromString(layerstring)
self.assertEqual(self.standardwriter._nlayers, nlayers)
self.assertEqual(self.standardwriter._boundaries, [1.0,2.0])
class TestStandardWriterModule(unittest.TestCase):
def setUp(self):
directories = {'share': ''}
self.molecule = fileToMol("tests/1UAO.pdb")
self.fragmentation = Fragmentation(self.molecule)
self.standardwriter = Standard(self.fragmentation, directories)
def test_defaults(self):
self.assertEqual(self.standardwriter._nlayers, 1)
def test_notimplementederror(self):
self.assertRaises(NotImplementedError, self.standardwriter.writeFile)
self.assertRaises(NotImplementedError, self.standardwriter.setup)
def test_setcentralfragmentid(self):
self.assertRaises(ValueError, self.standardwriter.setCentralFragmentID,
-1)
def test_setbuffermaxdistance(self):
self.assertRaises(ValueError, self.standardwriter.setBufferMaxDistance,
-0.1)
def test_setboundariesfromstring_two_layers(self):
layerstring = "1.0"
nlayers = 2
self.standardwriter.setBoundariesFromString(layerstring)
self.assertEqual(self.standardwriter._nlayers, nlayers)
self.assertEqual(self.standardwriter._boundaries, [1.0])
def test_setboundariesfromstring_three_layers(self):
layerstring = "1.0,2.0"
nlayers = 3
self.standardwriter.setBoundariesFromString(layerstring)
self.assertEqual(self.standardwriter._nlayers, nlayers)
self.assertEqual(self.standardwriter._boundaries, [1.0, 2.0])
def setUp(self):
directories = {'share':''}
self.molecule = fileToMol("tests/1UAO.pdb")
self.fragmentation = Fragmentation(self.molecule)
self.standardwriter = Standard(self.fragmentation, directories)
def setUp(self):
self.molecule = fileToMol("tests/1UAO.pdb")
self.fragmentation = Fragmentation(self.molecule)
self.standardwriter = Standard(self.fragmentation)
def setUp(self):
directories = {'share': ''}
self.molecule = fileToMol("tests/1UAO.pdb")
self.fragmentation = Fragmentation(self.molecule)
self.standardwriter = Standard(self.fragmentation, directories)
