def test_run(self): """hamming distance""" L = 20 a = structevol.makeAlignment(10,10, 0.1, 0) ha = structevol.ProfileAlignment(a) for m in ha.distances(): print m
def test_run(self): """hamming distance""" L = 20 a = structevol.makeAlignment(10, 10, 0.1, 0) ha = structevol.ProfileAlignment(a) for m in ha.distances(): print m
def test_run(self): """make alignment""" L = 20 for n in range(5,20): a = structevol.makeAlignment(n,L, 0.1, 0) #print a self.assertTrue(len(a)==n) self.assertTrue(len(a[0])==L)
def test_run(self): """make alignment""" L = 20 for n in range(5, 20): a = structevol.makeAlignment(n, L, 0.1, 0) #print a self.assertTrue(len(a) == n) self.assertTrue(len(a[0]) == L)