def test_add_content(): plate = lab.Plate96() well = plate.get_well_at_index(1) components_quantities = {"Compound_1": 5} volume = 20 * 10**(-6) # 20 uL well.add_content(components_quantities, volume=volume) assert well.content.quantities == {"Compound_1": 5}
def test_add_content(): plate = lab.Plate96() well = plate.get_well_at_index(1) components_quantities = {"Compound_1": 5} volume = 20 * 10**(-6) # 20 uL well.add_content(components_quantities, volume=volume) assert well.content.quantities == {"Compound_1": 5} well2 = plate.get_well_at_index(2) well2.add_content(components_quantities, volume=20, unit_volume="uL") assert well2.content.concentration() == 250000.00000000003
def test_apply(): with pytest.raises(ValueError): transfer.apply() source_2 = lab.Plate96(name="Source_2") source_2.wells["A1"].add_content({"Compound_1": 1}, volume=5 * 10**(-6)) destination_2 = lab.Plate96(name="Destination_2") transfer_2 = lab.Transfer(source_2.wells["A1"], destination_2.wells["B2"], volume) with pytest.raises(ValueError): transfer_2.apply() source_2.wells["A1"].add_content({"Compound_1": 1}, volume=25 * 10**(-6)) destination_2.wells["B2"].capacity = 3 * 10**(-6) with pytest.raises(ValueError): transfer_2.apply() destination_2.wells["B2"].capacity = 50 * 10**(-6) transfer_2.apply() assert destination_2.wells["B2"].volume == volume
def test_index_to_wellname(index, direction, expected): assert lab.Plate96().index_to_wellname(index, direction) == expected
def test_wellname_to_index(wellname, direction, expected): assert lab.Plate96().wellname_to_index(wellname, direction) == expected
def test_get_well_at_index(): well = lab.Plate96().get_well_at_index(5) assert well.name == "A5"
def test_wells_grouped_by(): assert len(lab.Plate96().wells_grouped_by()[0][1]) == 96
def test_list_filtered_wells(): def condition(well): return well.volume > 50 assert lab.Plate96().list_filtered_wells(condition) == []
def test_list_wells_in_row(): assert isinstance(lab.Plate96().list_wells_in_row(5)[0], Well)
def test_return_column(): assert isinstance(lab.Plate96().return_column(5)[0], Well) assert len(lab.Plate96().return_column(5)) == 8
def test_find_unique_well_containing(): with pytest.raises(Exception): lab.Plate96().find_unique_well_containing("testquery")
def test_find_unique_well_by_condition(): with pytest.raises(Exception): lab.Plate96().find_unique_well_by_condition(condition)
# pylint: disable=C0114,E0401,C0103,C0116 import pytest import synbiopython.lab_automation as lab def test_TransferError(): with pytest.raises(ValueError): raise lab.TransferError() source = lab.Plate96(name="Source") destination = lab.Plate96(name="Destination") source_well = source.wells["A1"] destination_well = destination.wells["B2"] volume = 25 * 10**(-6) transfer = lab.Transfer(source_well, destination_well, volume) def test_to_plain_string(): assert (transfer.to_plain_string() == "Transfer 2.50E-05L from Source A1 into Destination B2") def test_to_short_string(): assert (transfer.to_short_string() == "Transfer 2.50E-05L (Source-A1) -> (Destination-B2)") def test_with_new_volume(): new_volume = 50 * 10**(-7)
# pylint: disable=C0114,E0401,C0103,C0116,W0621 import pytest import synbiopython.lab_automation as lab from synbiopython.lab_automation.picklist.Transfer import TransferError from synbiopython.lab_automation.containers.Well import Well plate = lab.Plate96() well = plate.get_well_at_index(1) def test_volume(): assert well.volume == 0 def test_iterate_sources_tree(): result = well.iterate_sources_tree() assert isinstance(next(result), Well) def test_add_content(): plate = lab.Plate96() well = plate.get_well_at_index(1) components_quantities = {"Compound_1": 5} volume = 20 * 10**(-6) # 20 uL well.add_content(components_quantities, volume=volume) assert well.content.quantities == {"Compound_1": 5} well2 = plate.get_well_at_index(2) well2.add_content(components_quantities, volume=20, unit_volume="uL") assert well2.content.concentration() == 250000.00000000003
def test_return_row(): assert isinstance(lab.Plate96().return_row("A")[0], Well) assert isinstance(lab.Plate96().return_row(1)[0], Well) assert len(lab.Plate96().return_row("A")) == 12
def test_iter_wells(): result = lab.Plate96().iter_wells() assert isinstance(next(result), Well)
def test___repr__(): assert lab.Plate96().__repr__() == "Plate96(None)"
def test_list_well_data_fields(): with pytest.raises(KeyError): lab.Plate96().list_well_data_fields()