def test_add_content():
plate = lab.Plate96()
well = plate.get_well_at_index(1)
components_quantities = {"Compound_1": 5}
volume = 20 * 10**(-6) # 20 uL
well.add_content(components_quantities, volume=volume)
assert well.content.quantities == {"Compound_1": 5}
def test_add_content():
plate = lab.Plate96()
well = plate.get_well_at_index(1)
components_quantities = {"Compound_1": 5}
volume = 20 * 10**(-6) # 20 uL
well.add_content(components_quantities, volume=volume)
assert well.content.quantities == {"Compound_1": 5}
well2 = plate.get_well_at_index(2)
well2.add_content(components_quantities, volume=20, unit_volume="uL")
assert well2.content.concentration() == 250000.00000000003
def test_apply():
with pytest.raises(ValueError):
transfer.apply()
source_2 = lab.Plate96(name="Source_2")
source_2.wells["A1"].add_content({"Compound_1": 1}, volume=5 * 10**(-6))
destination_2 = lab.Plate96(name="Destination_2")
transfer_2 = lab.Transfer(source_2.wells["A1"], destination_2.wells["B2"],
volume)
with pytest.raises(ValueError):
transfer_2.apply()
source_2.wells["A1"].add_content({"Compound_1": 1}, volume=25 * 10**(-6))
destination_2.wells["B2"].capacity = 3 * 10**(-6)
with pytest.raises(ValueError):
transfer_2.apply()
destination_2.wells["B2"].capacity = 50 * 10**(-6)
transfer_2.apply()
assert destination_2.wells["B2"].volume == volume
def test_index_to_wellname(index, direction, expected):
assert lab.Plate96().index_to_wellname(index, direction) == expected
def test_wellname_to_index(wellname, direction, expected):
assert lab.Plate96().wellname_to_index(wellname, direction) == expected
def test_get_well_at_index():
well = lab.Plate96().get_well_at_index(5)
assert well.name == "A5"
def test_wells_grouped_by():
assert len(lab.Plate96().wells_grouped_by()[0][1]) == 96
def test_list_filtered_wells():
def condition(well):
return well.volume > 50
assert lab.Plate96().list_filtered_wells(condition) == []
def test_list_wells_in_row():
assert isinstance(lab.Plate96().list_wells_in_row(5)[0], Well)
def test_return_column():
assert isinstance(lab.Plate96().return_column(5)[0], Well)
assert len(lab.Plate96().return_column(5)) == 8
def test_find_unique_well_containing():
with pytest.raises(Exception):
lab.Plate96().find_unique_well_containing("testquery")
def test_find_unique_well_by_condition():
with pytest.raises(Exception):
lab.Plate96().find_unique_well_by_condition(condition)
# pylint: disable=C0114,E0401,C0103,C0116
import pytest
import synbiopython.lab_automation as lab
def test_TransferError():
with pytest.raises(ValueError):
raise lab.TransferError()
source = lab.Plate96(name="Source")
destination = lab.Plate96(name="Destination")
source_well = source.wells["A1"]
destination_well = destination.wells["B2"]
volume = 25 * 10**(-6)
transfer = lab.Transfer(source_well, destination_well, volume)
def test_to_plain_string():
assert (transfer.to_plain_string() ==
"Transfer 2.50E-05L from Source A1 into Destination B2")
def test_to_short_string():
assert (transfer.to_short_string() ==
"Transfer 2.50E-05L (Source-A1) -> (Destination-B2)")
def test_with_new_volume():
new_volume = 50 * 10**(-7)
# pylint: disable=C0114,E0401,C0103,C0116,W0621
import pytest
import synbiopython.lab_automation as lab
from synbiopython.lab_automation.picklist.Transfer import TransferError
from synbiopython.lab_automation.containers.Well import Well
plate = lab.Plate96()
well = plate.get_well_at_index(1)
def test_volume():
assert well.volume == 0
def test_iterate_sources_tree():
result = well.iterate_sources_tree()
assert isinstance(next(result), Well)
def test_add_content():
plate = lab.Plate96()
well = plate.get_well_at_index(1)
components_quantities = {"Compound_1": 5}
volume = 20 * 10**(-6) # 20 uL
well.add_content(components_quantities, volume=volume)
assert well.content.quantities == {"Compound_1": 5}
well2 = plate.get_well_at_index(2)
well2.add_content(components_quantities, volume=20, unit_volume="uL")
assert well2.content.concentration() == 250000.00000000003
def test_return_row():
assert isinstance(lab.Plate96().return_row("A")[0], Well)
assert isinstance(lab.Plate96().return_row(1)[0], Well)
assert len(lab.Plate96().return_row("A")) == 12
def test_iter_wells():
result = lab.Plate96().iter_wells()
assert isinstance(next(result), Well)
def test___repr__():
assert lab.Plate96().__repr__() == "Plate96(None)"
def test_list_well_data_fields():
with pytest.raises(KeyError):
lab.Plate96().list_well_data_fields()
