def overall_and_subset_test():
arr = np.array([
[0.2, 0.3, 0.4],
[0.1, 0.3, 0.6],
[0.6, 0.3, 0.6]])
cols = ['a','b','c']
index = ['one','two','three']
name = 'test_table'
t = Table(arr, cols, index, name)
# test init
assert(t.shape == arr.shape and np.all(t.arr == arr) and t.cols == cols and t.index == index and t.name == name)
# test copy
t2 = t.copy()
assert(t2.shape == arr.shape and np.all(t2.arr == arr) and t2.cols == cols and t2.index == index and t2.name == name)
# change values in the copy and make sure original is unmodified
t2.arr[0,:] = 1
t2.index[0] = 'one_m'
t2.cols[0] = 'big A'
t2.name = 'modified_table'
assert(t.shape == arr.shape and np.all(t.arr == arr) and t.cols == cols and t.index == index and t.name == name)
## subset the first and last rows of t2
arr2 = np.array([
[1, 1, 1],
[0.6, 0.3, 0.6]])
index2 = ['one_m','three']
cols2 = ['big A','b','c']
name2 = 'modified_table'
# by list of indices
t3 = t2.row_subset([0,2])
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr([0,2])
assert(np.all(t3_arr==arr2))
# by list of names
t3 = t2.row_subset(['one_m','three'])
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(['one_m','three'])
assert(np.all(t3_arr==arr2))
# by array of indices
t3 = t2.row_subset(np.array([0,2]))
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(np.array([0,2]))
assert(np.all(t3_arr==arr2))
# by array of names
t3 = t2.row_subset(np.array(['one_m','three']))
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(['one_m','three'])
assert(np.all(t3_arr==arr2))
# subset just the middle row of t2
arr2 = np.array([
[0.1, 0.3, 0.6]])
cols2 = ['big A','b','c']
index2 = ['two']
name2 = 'modified_table'
# by index
t3 = t2.row_subset(1)
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(1)
assert(np.all(t3_arr==arr2))
# by name
t3 = t2.row_subset('two')
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr('two')
assert(np.all(t3_arr==arr2.squeeze()))
## subset the first and last columns of t2
arr2 = np.array([
[1, 1],
[0.1, 0.6],
[0.6, 0.6]])
index2 = ['one_m','two','three']
cols2 = ['big A','c']
name2 = 'modified_table'
# by list of indices
t3 = t2.subset([0,2])
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr([0,2])
assert(np.all(t3_arr==arr2))
# by list of names
t3 = t2.subset(['big A','c'])
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(['big A','c'])
assert(np.all(t3_arr==arr2))
# by array of indices
t3 = t2.subset(np.array([0,2]))
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array([0,2]))
assert(np.all(t3_arr==arr2))
# by array of names
t3 = t2.subset(np.array(['big A','c']))
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array(['big A','c']))
assert(np.all(t3_arr==arr2))
## subset just the middle column of t2
arr2 = np.array([
[1],
[0.3],
[0.3]])
index2 = ['one_m','two','three']
cols2 = ['b']
name2 = 'modified_table'
# by index
t3 = t2.subset(1)
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array(['b']))
assert(np.all(t3_arr==arr2.squeeze()))
# by name
t3 = t2.subset('b')
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(['b'])
assert(np.all(t3_arr==arr2.squeeze()))
## row_subset without index
t2 = Table(arr, cols, None, name)
# subset the first and last rows of t2
arr2 = np.array([
[0.2, 0.3, 0.4],
[0.6, 0.3, 0.6]])
index2 = None
cols2 = ['a','b','c']
name2 = 'test_table'
# by list of indices
t3 = t2.row_subset([0,2])
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr([0,2])
assert(np.all(t3_arr==arr2))
# by array of indices
t3 = t2.row_subset(np.array([0,2]))
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(np.array([0,2]))
assert(np.all(t3_arr==arr2))
## subset just the middle row of t2
arr2 = np.array([
[0.1, 0.3, 0.6]])
cols2 = ['a','b','c']
name2 = 'test_table'
# by index
t3 = t2.row_subset(1)
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(1)
assert(np.all(t3_arr==arr2.squeeze()))
## subset just the middle value of t2
arr2 = np.array([
[0.3]])
cols2 = ['b']
name2 = 'test_table'
# by index
t3 = t2.row_subset(1).subset(1)
assert(t3.shape == arr2.shape and np.all(t3.arr == arr2) and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset(1).subset_arr(1)
assert(np.all(t3_arr==np.array([0.3])))
def overall_and_subset_test():
arr = np.array([[0.2, 0.3, 0.4], [0.1, 0.3, 0.6], [0.6, 0.3, 0.6]])
cols = ['a', 'b', 'c']
index = ['one', 'two', 'three']
name = 'test_table'
t = Table(arr, cols, index, name)
# test init
assert (t.shape == arr.shape and np.all(t.arr == arr) and t.cols == cols
and t.index == index and t.name == name)
# test copy
t2 = t.copy()
assert (t2.shape == arr.shape and np.all(t2.arr == arr) and t2.cols == cols
and t2.index == index and t2.name == name)
# change values in the copy and make sure original is unmodified
t2.arr[0, :] = 1
t2.index[0] = 'one_m'
t2.cols[0] = 'big A'
t2.name = 'modified_table'
assert (t.shape == arr.shape and np.all(t.arr == arr) and t.cols == cols
and t.index == index and t.name == name)
## subset the first and last rows of t2
arr2 = np.array([[1, 1, 1], [0.6, 0.3, 0.6]])
index2 = ['one_m', 'three']
cols2 = ['big A', 'b', 'c']
name2 = 'modified_table'
# by list of indices
t3 = t2.row_subset([0, 2])
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr([0, 2])
assert (np.all(t3_arr == arr2))
# by list of names
t3 = t2.row_subset(['one_m', 'three'])
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(['one_m', 'three'])
assert (np.all(t3_arr == arr2))
# by array of indices
t3 = t2.row_subset(np.array([0, 2]))
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(np.array([0, 2]))
assert (np.all(t3_arr == arr2))
# by array of names
t3 = t2.row_subset(np.array(['one_m', 'three']))
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(['one_m', 'three'])
assert (np.all(t3_arr == arr2))
# subset just the middle row of t2
arr2 = np.array([[0.1, 0.3, 0.6]])
cols2 = ['big A', 'b', 'c']
index2 = ['two']
name2 = 'modified_table'
# by index
t3 = t2.row_subset(1)
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(1)
assert (np.all(t3_arr == arr2))
# by name
t3 = t2.row_subset('two')
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr('two')
assert (np.all(t3_arr == arr2.squeeze()))
## subset the first and last columns of t2
arr2 = np.array([[1, 1], [0.1, 0.6], [0.6, 0.6]])
index2 = ['one_m', 'two', 'three']
cols2 = ['big A', 'c']
name2 = 'modified_table'
# by list of indices
t3 = t2.subset([0, 2])
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr([0, 2])
assert (np.all(t3_arr == arr2))
# by list of names
t3 = t2.subset(['big A', 'c'])
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(['big A', 'c'])
assert (np.all(t3_arr == arr2))
# by array of indices
t3 = t2.subset(np.array([0, 2]))
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array([0, 2]))
assert (np.all(t3_arr == arr2))
# by array of names
t3 = t2.subset(np.array(['big A', 'c']))
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array(['big A', 'c']))
assert (np.all(t3_arr == arr2))
## subset just the middle column of t2
arr2 = np.array([[1], [0.3], [0.3]])
index2 = ['one_m', 'two', 'three']
cols2 = ['b']
name2 = 'modified_table'
# by index
t3 = t2.subset(1)
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(np.array(['b']))
assert (np.all(t3_arr == arr2.squeeze()))
# by name
t3 = t2.subset('b')
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.subset_arr(['b'])
assert (np.all(t3_arr == arr2.squeeze()))
## row_subset without index
t2 = Table(arr, cols, None, name)
# subset the first and last rows of t2
arr2 = np.array([[0.2, 0.3, 0.4], [0.6, 0.3, 0.6]])
index2 = None
cols2 = ['a', 'b', 'c']
name2 = 'test_table'
# by list of indices
t3 = t2.row_subset([0, 2])
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr([0, 2])
assert (np.all(t3_arr == arr2))
# by array of indices
t3 = t2.row_subset(np.array([0, 2]))
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(np.array([0, 2]))
assert (np.all(t3_arr == arr2))
## subset just the middle row of t2
arr2 = np.array([[0.1, 0.3, 0.6]])
cols2 = ['a', 'b', 'c']
name2 = 'test_table'
# by index
t3 = t2.row_subset(1)
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset_arr(1)
assert (np.all(t3_arr == arr2.squeeze()))
## subset just the middle value of t2
arr2 = np.array([[0.3]])
cols2 = ['b']
name2 = 'test_table'
# by index
t3 = t2.row_subset(1).subset(1)
assert (t3.shape == arr2.shape and np.all(t3.arr == arr2)
and t3.cols == cols2 and t3.index == index2 and t3.name == name2)
t3_arr = t2.row_subset(1).subset_arr(1)
assert (np.all(t3_arr == np.array([0.3])))
