def __init__(self, mathType=float):
ConfigFactory.__init__(self)
self.mathType = mathType
for obj in [
HMM,
State,
GeneralizedHMM,
GeneralizedState,
GeneralizedPairHMM,
GeneralizedPairState,
PairRepeatState,
HighOrderState,
HighOrderRepeatState,
RepeatLengthDistribution,
SimpleMatchState,
SimpleIndelState,
LogNum,
]:
self.addFunction(obj.__name__, getInitializerObject(obj, mathType))
for (name, function) in [
("JukesCantorGenerator", JukesCantorGenerator),
("backgroundprob", BackgroundProbabilityGenerator),
]:
self.addFunction(name, getInitializerFunction(function, mathType))
for (name, constant) in [
# STUB
]:
self.addConstant(name, constant)
def test_configLoadingAndSaving(self):
input_file = "data/test_data/ConfigFactoryTestData.js"
a = ConfigFactory()
a.addObject(ConfigObject)
X = a.load(input_file)
self.assertEqual(type(X[1]), type(ConfigObject()),
"objectHook does not work")
X[1] = X[1].toJSON()
Y = [{'1': 2, 'lol': 1.4},
{'__name__': 'ConfigObject'},
[1, 2, 3, 4, {'1': 2}]]
self.assertEqual(X[0], Y[0], "loading of json does not work")
self.assertEqual(X[2], Y[2], "loading of json does not work")
self.assertEqual(X[1], Y[1], "saving to \"json\" is not working: " + \
str(X) + " != " + str(Y))
self.assertEqual(X, Y, "this should not happened")
def test_configLoadingAndSaving(self):
input_file = "data/test_data/ConfigFactoryTestData.js"
a = ConfigFactory()
a.addObject(ConfigObject)
X = a.load(input_file)
self.assertEqual(type(X[1]), type(ConfigObject()),
"objectHook does not work")
X[1] = X[1].toJSON()
Y = [{
'1': 2,
'lol': 1.4
}, {
'__name__': 'ConfigObject'
}, [1, 2, 3, 4, {
'1': 2
}]]
self.assertEqual(X[0], Y[0], "loading of json does not work")
self.assertEqual(X[2], Y[2], "loading of json does not work")
self.assertEqual(X[1], Y[1], "saving to \"json\" is not working: " + \
str(X) + " != " + str(Y))
self.assertEqual(X, Y, "this should not happened")
