def __init__(self, mathType=float):
ConfigFactory.__init__(self)
self.mathType = mathType
for obj in [
HMM,
State,
GeneralizedHMM,
GeneralizedState,
GeneralizedPairHMM,
GeneralizedPairState,
PairRepeatState,
HighOrderState,
HighOrderRepeatState,
RepeatLengthDistribution,
SimpleMatchState,
SimpleIndelState,
LogNum,
]:
self.addFunction(obj.__name__, getInitializerObject(obj, mathType))
for (name, function) in [
("JukesCantorGenerator", JukesCantorGenerator),
("backgroundprob", BackgroundProbabilityGenerator),
]:
self.addFunction(name, getInitializerFunction(function, mathType))
for (name, constant) in [
# STUB
]:
self.addConstant(name, constant)
