def isosurfacePlot(self, stay=False, samples=100, contours=50):
visit.AddWindow()
returned = []
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
p = visit.PseudocolorAttributes()
q = visit.ResampleAttributes()
r = visit.IsosurfaceAttributes()
q.samplesX = samples
q.samplesY = samples
q.samplesZ = samples
r.contourNLevels = contours
plot = visit.AddPlot("Pseudocolor", "Heat")
visit.AddOperator("Resample")
# visit.AddOperator("Isosurface")
visit.SetOperatorOptions(q)
visit.SetOperatorOptions(r)
visit.SetPlotOptions(p)
visit.DrawPlots()
returned.append(visit.SaveWindow())
count = 0
visit.AddOperator("Isosurface")
visit.DrawPlots()
time.sleep(60)
returned.append(visit.SaveWindow())
return returned
def plane_slice_plotting(window_number, axis_number, label, images, timestamp):
"""
Copy the Mesh, Pseudocolor, and Contour plots into a new VisIt window and
slice through the proper axis.
Input:
______
window_number: int
The number of the window to open (2,3, or 4).
axis_number: int
The number of the axis to slice through (0 for X, 1 for Y, 2 for Z).
label: str
The title of the plane slice.
images: boolean
Whether or not to save images of the plot windows.
timestamp: boolean
Whether or not to keep the timestamp on plot window images.
Returns:
________
none
"""
# Open a new window with all three plots.
Vi.AddWindow()
Vi.CopyPlotsToWindow(1, window_number)
# Create the plane slice plot by activating the mesh, pseudocolor, and contour plots.
Vi.SetActiveWindow(window_number)
Vi.SetActivePlots((0, 1, 2))
# Remove the clip and slice operators from previous plot windows.
Vi.RemoveAllOperators()
# Add a slice through the proper axis.
Vi.AddOperator("Slice", 1)
s = Vi.SliceAttributes()
s.axisType = axis_number
Vi.SetOperatorOptions(s)
# Include a label for each plane slice plot.
banner = Vi.CreateAnnotationObject("Text2D")
banner.position = (0.45, 0.92)
banner.text = label
banner.height = 0.05
# Include the CNERG logo in the bottom left corner of the plot.
image = Vi.CreateAnnotationObject("Image")
image.image = os.path.dirname(os.path.abspath(__file__)) + "/cnerg.jpg"
image.position = (0.02, 0.02)
image.width = 10
image.height = 10
Vi.DrawPlots()
if images:
if timestamp:
attributes = Vi.GetAnnotationAttributes()
attributes.userInfoFlag = 0
Vi.SetAnnotationAttributes(attributes)
Vi.SaveWindow()
def draw(self):
print "drawing window %d of dimension %d"%(self.i,self.dim)
v.SetActiveWindow(self.i)
v.SetAnnotationAttributes(self.annot)
if self.dim == 2:
# add the slice
assert self._slice is not None
for i,plot in enumerate(self.plots):
sliced = False
for op in plot.operators:
if "slice" == op.oname:
sliced = True
if not sliced:
print "slicing plot %d..."%i
v.SetActivePlots(i)
v.AddOperator("Slice")
sa = self._slice.toAttributes()
v.SetOperatorOptions(sa)
plot.operators.append(Operator("slice", "Slice", sa))
if self.exaggeration is not None:
print "exaggerating..."
self._exaggerateVertical()
# set the plot options
for i, plot in enumerate(self.plots):
print "setting plot options for plot %i..."%i
v.SetActivePlots(i)
v.SetPlotOptions(plot.patts)
# set the view
print "setting the view..."
if self.dim == 2:
v.SetView2D(self.view)
else:
v.SetView3D(self.view)
print "drawing..."
v.DrawPlots()
def pseudocolorPlot(self):
visit.AddWindow()
returned = []
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
p = visit.PseudocolorAttributes()
plot = visit.AddPlot("Pseudocolor", "Heat")
visit.SetPlotOptions(p)
visit.DrawPlots()
return visit.SaveWindow()
def write_plots(f):
f.write('# Create plots\n')
pL = visit.GetPlotList()
activePlots = []
for i in range(visit.GetNumPlots()):
plot = pL.GetPlots(i)
if plot.activeFlag:
activePlots = activePlots + [i]
plotName = visit.PlotPlugins()[plot.plotType]
visit.SetActivePlots(i)
f.write('# Create plot %d\n' % (i + 1))
f.write('OpenDatabase("%s")\n' % plot.databaseName)
f.write('AddPlot("%s", "%s", 0, 0)\n' % (plotName, plot.plotVar))
atts = eval("visit." + plotName + "Attributes(1)")
defaultatts = eval("visit." + plotName + "Attributes()")
if write_state_object_diffs(f, atts, defaultatts, "atts"):
f.write('SetPlotOptions(atts)\n')
else:
f.write('#SetPlotOptions(atts)\n')
opIndex = 0
for op in plot.operatorNames:
f.write('AddOperator("%s", 0)\n' % op)
opAtts = visit.GetOperatorOptions(opIndex)
defaultAtts = eval("visit." + object_type(opAtts) + "()")
if write_state_object_diffs(f, opAtts, defaultAtts, "opAtts"):
f.write('SetOperatorOptions(opAtts)\n')
else:
f.write('#SetOperatorOptions(opAtts)\n')
opIndex += 1
# Set the SIL restriction
write_sil(f)
f.write('\n')
if len(activePlots) > 1:
f.write('SetActivePlots(%s)\n\n' % str(activePlots))
visit.SetActivePlots(activePlots)
elif len(activePlots) == 1:
f.write('SetActivePlots(%d)\n\n' % activePlots[0])
visit.SetActivePlots(activePlots[0])
def _exaggerateVertical(self):
if self.dim == 3:
self.view.axis3DScaleFlag = 1
self.view.axis3DScales = (self.view.axis3DScales[0],
self.view.axis3DScales[1],
self.exaggeration)
else:
for i,plot in enumerate(self.plots):
done = False
for op in plot.operators:
if "exaggerate_vertical" == op.oname:
done = True
if not done:
print "transforming plot %d..."%i
tr = v.TransformAttributes()
tr.doScale = 1
tr.scaleY = self.exaggeration
v.SetActivePlots(i)
v.AddOperator("Transform")
v.SetOperatorOptions(tr)
plot.operators.append(Operator("exaggerate_vertical", "Transform", tr))
def scatterPlot(self,
coords=["var00", "var01", "var02", "var03"],
colorTable="hot",
pixelSize=5,
stay=False):
visit.AddWindow()
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
plot = visit.AddPlot("Scatter", coords[0])
p = visit.ScatterAttributes()
# Variables
if coords[1]:
p.var2 = coords[1]
if coords[2]:
p.var3 = coords[2]
if coords[3]:
p.var4 = coords[3]
#Role Variable Roles take intergers as inputs, not strings
p.var1Role = 0
p.var2Role = 1
p.var3Role = 2
p.var4Role = 3
p.scaleCube = 0
#p.colorType = "ColorByColorTable"
p.pointSizePixels = pixelSize
p.colorTableName = colorTable
#p.colorScaling = "Log"
v = visit.GetView3D()
v.viewNormal = (-0.571619, 0.405393, 0.713378)
v.viewUp = (0.308049, 0.911853, -0.271346)
visit.SetPlotOptions(p)
visit.SetView3D(v)
visit.DrawPlots()
count = 0
time.sleep(5)
return visit.SaveWindow()
def make_movie_auto(variableName,
boundaryBox,
vlsvFileName,
inputDirectory,
inputFileName,
outputDirectory,
outputFileName,
colorTableName="hot_desaturated",
startFrame=-1,
endFrame=-1,
thresholdCoefficient=0.6):
'''
Function for making a movie
Arguments:
:param variableName Name of the variable
:param boundaryBox Box for collecting min and max threshold (The movie will focus on that area)
:param vlsvFileName Name of a vlsv file where the function collects the threshold for the boundary box
:param inputDirectory Path to input vlsv/silo files
:param inputFileName Name of the file(s) so for example if the filenames are bulk.0000.silo, bulk.0001.silo, .. then inputFileName=\"bulk.*.silo\""
:param outputDirectory Path to output directory
:param outputFileName Name of the output file
:param colorTableName="hot_desaturated" Color table for the plots
:param thresholdCoefficient Sets the coefficient for a covariant collected from the values from boundary box. The lower this is, the more focused the movie will be on the boundary box area
:param startFrame=-1 Starting frame of the movie (-1 equals 0)
:param endFrame=-1 Starting frame of the movie (-1 equals last frame)
'''
if thresholdCoefficient < 0:
print("thresholdCoefficient must be non-negative!")
return
# OPTIONS
#################################################################
# Input frame properties
_startFrame = startFrame # Note: if _startFrame is set to -1 the start frame gets set to 0
_endFrame = endFrame # Note: if _endFrame is set to -1 the _endFrame is automatically the number of frames in the database
# Input variable
_variableName = variableName
# Input directory and file names
#_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved)
_outputDir = outputDirectory
#_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, ..
_outputFileName = outputFileName # The file names for the png files.
#databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files
databaseName = "localhost:" + inputDirectory + inputFileName + " database" # For navigating to the silo files
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
# Get the min and max values:
# Get all cell ids within the boundary box:
vlsvReader = VlsvReader(vlsvFileName)
# Get global boundaries:
# Get xmax, xmin and xcells_ini
xmax = vlsvReader.read_parameter(name="xmax")
xmin = vlsvReader.read_parameter(name="xmin")
xcells = vlsvReader.read_parameter(name="xcells_ini")
# Do the same for y
ymax = vlsvReader.read_parameter(name="ymax")
ymin = vlsvReader.read_parameter(name="ymin")
ycells = vlsvReader.read_parameter(name="ycells_ini")
# And for z
zmax = vlsvReader.read_parameter(name="zmax")
zmin = vlsvReader.read_parameter(name="zmin")
zcells = vlsvReader.read_parameter(name="zcells_ini")
#Calculate cell lengths:
cell_lengths = np.array([(xmax - xmin) / (float)(xcells),
(ymax - ymin) / (float)(ycells),
(zmax - zmin) / (float)(zcells)])
# Get cell indices:
cell_indice_bounds = np.array([
(int)(((float)(boundaryBox[0]) - xmin) / (float)(cell_lengths[0])),
(int)(((float)(boundaryBox[1]) - xmin) / (float)(cell_lengths[0])),
(int)(((float)(boundaryBox[2]) - ymin) / (float)(cell_lengths[1])),
(int)(((float)(boundaryBox[3]) - ymin) / (float)(cell_lengths[1])),
(int)(((float)(boundaryBox[4]) - zmin) / (float)(cell_lengths[2])),
(int)(((float)(boundaryBox[5]) - zmin) / (float)(cell_lengths[2]))
])
# Get every cell id within the boundary box:
cellids = []
cell_indice = np.array(
[cell_indice_bounds[0], cell_indice_bounds[2], cell_indice_bounds[4]])
while True:
cellids.append(cell_indice[0] + cell_indice[1] * xcells +
cell_indice[2] * xcells * ycells + 1)
if cell_indice[0] < cell_indice_bounds[1]:
cell_indice[0] = cell_indice[0] + 1
elif cell_indice[1] < cell_indice_bounds[3]:
cell_indice[1] = cell_indice[1] + 1
cell_indice[0] = cell_indice_bounds[0]
elif cell_indice[2] < cell_indice_bounds[5]:
cell_indice[2] = cell_indice[2] + 1
cell_indice[1] = cell_indice_bounds[1]
cell_indice[0] = cell_indice_bounds[0]
else:
# Indice out of bounds -- got all cell ids
break
# Convert cell ids into set:
cellids = Set(cellids)
cellidlocations = []
# Get all of the cell ids locations:
allcellids = vlsvReader.read(name="SpatialGrid", tag="MESH")
for i in range(len(allcellids)):
if allcellids[i] in cellids:
#This cell id is within the user-given boundary
cellidlocations.append(allcellids[i])
# Get all of the values:
allvalues = vlsvReader.read_variables(name=_variableName)
values = []
# Get the values of the cell ids within the boundary
for i in cellidlocations:
values.append(allvalues[i])
# We now have all the cell ids (and their locations in the arrays) from the area, set min and max thresholds:
meanValue = np.mean(values)
standardDeviationValue = np.std(values)
maxValue = meanValue + (
float)(thresholdCoefficient) * standardDeviationValue
minValue = meanValue - (
float)(thresholdCoefficient) * standardDeviationValue
# Put threshold values:
minVariableValue = minValue
maxVariableValue = maxValue
# LaunchNowin(vdir=visitBinDirectory)
#dx = speedX * frameInSeconds # Note: This is in meters per frame!
#dy = speedY * frameInSeconds # Note: This is in meters per frame!
#LaunchNowin(vdir="/usr/local/visit/bin")
#Set up window and annotations
#vis.LaunchNowin(vdir="/usr/local/visit/bin")
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE
vis.SetActivePlots(0)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = colorTableName
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.SetActivePlots(0)
vis.AddOperator("Slice", 1)
vis.SetActivePlots(0)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
if _endFrame == -1:
_endFrame = vis.TimeSliderGetNStates() - 1
if _startFrame == -1:
_startFrame = 0
# Iterate through frames
for i in range(_startFrame, _endFrame + 1):
vis.SetTimeSliderState(i)
frame = i - _startFrame
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = _outputDir
vis.SaveWindowAtts.fileName = _outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 3000
vis.SaveWindowAtts.height = 300
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
#subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName)
pyVisitPath = "pyVisit/"
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh")
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName)
frameRate = "10"
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
_outputDir, _outputFileName, frameRate
])
import matplotlib.pyplot as plt
from mpl_toolkits.mplot3d import Axes3D
from MeshClass import *
from DataClass import *
from CaseClass import *
Loc = "OpenFoamCases/"
Files = ['elbow/', 'Coutte_Flow_40x40-FixedTemperature/', 'forwardStep/']
Loc = Loc + Files[0]
# Reading Mesh Data and Evaluating the initail points
case = Case()
case.loadOpenFoamFile(Loc)
case.print_output_vtk()
# visit
sys.path.append("/home/neo/visit/2.11.0/linux-x86_64/lib/site-packages")
import visit as vs
vs.Launch()
vs.OpenDatabase("Results/results-time-1.vtk")
vs.AddPlot("Pseudocolor", 'X-Velocity')
vs.AddPlot("Pseudocolor", "Pressure")
vs.SetActivePlots(0)
vs.HideActivePlots()
vs.DrawPlots()
d = input('Press anything to quit')
def make_distribution_movie(cellids,
rotated,
inputDirectory,
outputDirectory,
outputFileName,
zoom=1.0,
viewNormal=[0.488281, 0.382966, -0.784167],
minThreshold=1e-18,
maxThreshold=1e37):
'''Makes a distribution movie of some given distribution data
Example usage:
make_distribution_movie(cellids=[18302, 19432, 19042], rotated=True, inputDirectory=\"/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/\", outputDirectory=\"/home/hannukse/MOVIES/\", outputFileName=\"testmovie\", zoom=0.8, viewNormal=[0.488281, 0.382966, -0.784167], minThreshold=1e-17, maxThreshold=1.2e37)
Note: viewNormal determines the angle of view (straight from visit)
'''
if len(viewNormal) != 3:
print "ERROR, INVALID VIEWNORMAL LENGTH, SHOULD BE 3"
return
for cell in sorted(cellids):
# OPTIONS
###########################################################
cellid = str(cell)
#databaseName = "localhost:/home/hannukse/meteo/lustre/tmp/hannuksela/AAM/velgrid.rotated." + cellid + ".*.silo database"
if rotated == True:
rotateFix = "rotated."
else:
rotateFix = ""
inputFileName = "velgrid." + rotateFix + cellid + ".*.silo"
databaseName = "localhost:" + inputDirectory + inputFileName + " database"
outputDir = outputDirectory
fileName = outputFileName + "_" + cellid + "_"
WIDTH = 3000
HEIGHT = 3000
# Threshold values:
# TODO: USE VLSV READER TO AUTOMATE THIS
minimumThreshold = minThreshold
maximumThreshold = maxThreshold
###########################################################
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
#Make a plot
vis.AddPlot("Pseudocolor", "avgs", 1, 1)
vis.SetActivePlots(0)
vis.AddOperator("Threshold", 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("default")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (minimumThreshold)
vis.ThresholdAtts.upperBounds = (maximumThreshold)
vis.ThresholdAtts.defaultVarName = "avgs"
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.DrawPlots()
# Begin spontaneous state
vis.View3DAtts = vis.View3DAttributes()
vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1],
viewNormal[2])
vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841)
vis.View3DAtts.viewAngle = 30
vis.View3DAtts.parallelScale = 1.45614e+06
vis.View3DAtts.nearPlane = -2.91228e+06
vis.View3DAtts.farPlane = 2.91228e+06
vis.View3DAtts.imagePan = (0, 0)
vis.View3DAtts.imageZoom = zoom
vis.View3DAtts.perspective = 1
vis.View3DAtts.eyeAngle = 2
vis.View3DAtts.centerOfRotationSet = 0
vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.axis3DScaleFlag = 0
vis.View3DAtts.axis3DScales = (1, 1, 1)
vis.View3DAtts.shear = (0, 0, 1)
vis.SetView3D(vis.View3DAtts)
# End spontaneous state
vis.ViewCurveAtts = vis.ViewCurveAttributes()
vis.ViewCurveAtts.domainCoords = (0, 1)
vis.ViewCurveAtts.rangeCoords = (0, 1)
vis.ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.ViewCurveAtts.domainScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG
vis.ViewCurveAtts.rangeScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG
vis.SetViewCurve(vis.ViewCurveAtts)
vis.View2DAtts = vis.View2DAttributes()
vis.View2DAtts.windowCoords = (0, 1, 0, 1)
vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto
vis.View2DAtts.fullFrameAutoThreshold = 100
vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.windowValid = 0
vis.SetView2D(vis.View2DAtts)
vis.View3DAtts = vis.View3DAttributes()
vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1],
viewNormal[2])
vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841)
vis.View3DAtts.viewAngle = 30
vis.View3DAtts.parallelScale = 1.45614e+06
vis.View3DAtts.nearPlane = -2.91228e+06
vis.View3DAtts.farPlane = 2.91228e+06
vis.View3DAtts.imagePan = (0, 0)
vis.View3DAtts.imageZoom = zoom
vis.View3DAtts.perspective = 1
vis.View3DAtts.eyeAngle = 2
vis.View3DAtts.centerOfRotationSet = 0
vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891)
vis.View3DAtts.axis3DScaleFlag = 0
vis.View3DAtts.axis3DScales = (1, 1, 1)
vis.View3DAtts.shear = (0, 0, 1)
vis.SetView3D(vis.View3DAtts)
vis.ViewAxisArrayAtts = vis.ViewAxisArrayAttributes()
vis.ViewAxisArrayAtts.domainCoords = (0, 1)
vis.ViewAxisArrayAtts.rangeCoords = (0, 1)
vis.ViewAxisArrayAtts.viewportCoords = (0.15, 0.9, 0.1, 0.85)
vis.SetViewAxisArray(vis.ViewAxisArrayAtts)
for i in range(0, vis.GetDatabaseNStates()):
vis.SetTimeSliderState(i)
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = outputDir
vis.SaveWindowAtts.fileName = fileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = WIDTH
vis.SaveWindowAtts.height = HEIGHT
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
framerate = 5
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
outputDir, fileName, framerate
])
k = k + 1000
if k < kMax:
tl.visible = 0
visit.DeleteAllPlots()
visit.CloseDatabase(filename)
# tl.visible = 0
# Here is the main
windowA = visit.SaveWindowAttributes()
windowA.format = windowA.JPEG
windowA.progressive = 1
windowA.width = 807
windowA.height = 908
windowA.fileName = "fdensity"
#windowA.outputDirectory = "/global/u2/e/efeibush/gtc/flow/flow3/compare/densityimages"
windowA.outputToCurrentDirectory = 1
#windowA.screenCapture = 1
visit.SetSaveWindowAttributes(windowA)
#a = visit.ListPlots()
b = visit.SetActivePlots(0)
anot = visit.GetAnnotationAttributes()
anot.databaseInfoFlag = 0
visit.SetAnnotationAttributes(anot)
viewit()
def draw_point_picture(variableName,
minValue,
maxValue,
inputDirectory,
inputFileName,
coordinate,
outputDirectory,
outputFileName,
colorTable="hot_desaturated"):
'''
Function for making a visit plot with a point
Arguments:
:param variableName Name of the variable
:param minValue Minimum value of the variable
:param maxValue Maximum value of the variable
:param inputDirectory Path to input vlsv/silo files
:param inputFileName Name of the file, for example \"bulk.00000.silo\"
:param coordinates Coordinates corresponding to the files so for example [ [[0,0,0], [0,1,0]], [[2,1,2], [2,1,4]] ]
:param outputDirectory Path to output directory
:param outputFileName Name of the output file
:param colorTable="hot_desaturated" Color table for the plots
'''
# OPTIONS
#################################################################
# Input variable
_variableName = variableName
minVariableValue = minValue
maxVariableValue = maxValue
colorTableName = colorTable
# Input directory and file names
_outputDir = outputDirectory
_outputFileName = outputFileName # The file names for the png files.
databaseName = "localhost:" + inputDirectory + inputFileName # For navigating to the silo files
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
inputFileName2 = "point.vtk"
databaseName2 = "localhost:" + os.getcwd() + "/" + inputFileName2
currentPlot = 0
vis.OpenDatabase(databaseName, 0)
#vis.ActiveDatabase("localhost:" + inputDirectory + inputFileName)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE
vis.SetActivePlots(currentPlot)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = colorTableName
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.AddOperator("Slice", 1)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
create_point_vtk(fileName=inputFileName2, coordinates=coordinate)
vis.OpenDatabase(databaseName2, 0)
currentPlot = currentPlot + 1
vis.SetActivePlots(currentPlot)
vis.AddPlot("Mesh", "mesh", 1, 1)
vis.MeshAtts = vis.MeshAttributes()
vis.MeshAtts.legendFlag = 1
vis.MeshAtts.lineStyle = vis.MeshAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.MeshAtts.lineWidth = 0
vis.MeshAtts.meshColor = (0, 0, 0, 255)
vis.MeshAtts.outlineOnlyFlag = 0
vis.MeshAtts.errorTolerance = 0.01
vis.MeshAtts.meshColorSource = vis.MeshAtts.Foreground # Foreground, MeshCustom
vis.MeshAtts.opaqueColorSource = vis.MeshAtts.Background # Background, OpaqueCustom
vis.MeshAtts.opaqueMode = vis.MeshAtts.Auto # Auto, On, Off
vis.MeshAtts.pointSize = 0.05
vis.MeshAtts.opaqueColor = (255, 255, 255, 255)
vis.MeshAtts.smoothingLevel = vis.MeshAtts.None # None, Fast, High
vis.MeshAtts.pointSizeVarEnabled = 0
vis.MeshAtts.pointSizeVar = "default"
vis.MeshAtts.pointType = vis.MeshAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.MeshAtts.showInternal = 0
vis.MeshAtts.pointSizePixels = 25
vis.MeshAtts.opacity = 1
vis.SetPlotOptions(vis.MeshAtts)
vis.DrawPlots()
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = _outputDir
vis.SaveWindowAtts.fileName = _outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 3000
vis.SaveWindowAtts.height = 3000
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.SetActivePlots((0, 1))
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName2)
vis.CloseDatabase(databaseName)
def create_visit_point_movie(variableName,
minValue,
maxValue,
inputDirectory,
inputFileNames,
coordinates,
outputDirectory,
outputFileName,
colorTable="hot_desaturated"):
'''
Function for making a movie
Arguments:
:param variableName Name of the variable
:param minValue Minimum value of the variable
:param maxValue Maximum value of the variable
:param inputDirectory Path to input vlsv/silo files
:param inputFileNames Name of the files for example [\"bulk.00000.silo\", \"bulk.00001.silo\"]
:param coordinates Coordinates corresponding to the files so for example [ [[0,0,0], [0,1,0]], [[2,1,2], [2,1,4]] ]
:param outputDirectory Path to output directory
:param outputFileName Name of the output file
:param colorTable="hot_desaturated" Color table for the plots
'''
coordinates = [coordinates]
for i in range(len(inputFileNames)):
# OPTIONS
#################################################################
# Input variable
_variableName = variableName
minVariableValue = minValue
maxVariableValue = maxValue
colorTableName = colorTable
# Input directory and file names
#_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved)
_outputDir = outputDirectory
#_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, ..
_outputFileName = outputFileName # The file names for the png files.
#databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files
inputFileName = inputFileNames[i]
databaseName = "localhost:" + inputDirectory + inputFileName # For navigating to the silo files
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
# LaunchNowin(vdir=visitBinDirectory)
#dx = speedX * frameInSeconds # Note: This is in meters per frame!
#dy = speedY * frameInSeconds # Note: This is in meters per frame!
#LaunchNowin(vdir="/usr/local/visit/bin")
#Set up window and annotations
#vis.LaunchNowin(vdir="/usr/local/visit/bin")
inputFileName2 = "point.vtk"
databaseName2 = "localhost:" + os.getcwd() + "/" + inputFileName2
vis.OpenDatabase(databaseName, 0)
#vis.ActiveDatabase("localhost:" + inputDirectory + inputFileName)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE
vis.SetActivePlots(1)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = colorTableName
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.SetActivePlots(1)
vis.AddOperator("Slice", 1)
vis.SetActivePlots(1)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
vis.SetActivePlots(0)
for coordinate in coordinates[i]:
print(str(coordinate))
create_point_vtk(fileName=inputFileName2, coordinates=coordinate)
vis.OpenDatabase(databaseName2, 0)
vis.AddPlot("Mesh", "mesh", 1, 1)
vis.SetActivePlots(vis.GetNumPlots())
vis.MeshAtts = vis.MeshAttributes()
vis.MeshAtts.legendFlag = 1
vis.MeshAtts.lineStyle = vis.MeshAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.MeshAtts.lineWidth = 0
vis.MeshAtts.meshColor = (0, 0, 0, 255)
vis.MeshAtts.outlineOnlyFlag = 0
vis.MeshAtts.errorTolerance = 0.01
vis.MeshAtts.meshColorSource = vis.MeshAtts.Foreground # Foreground, MeshCustom
vis.MeshAtts.opaqueColorSource = vis.MeshAtts.Background # Background, OpaqueCustom
vis.MeshAtts.opaqueMode = vis.MeshAtts.Auto # Auto, On, Off
vis.MeshAtts.pointSize = 0.05
vis.MeshAtts.opaqueColor = (255, 255, 255, 255)
vis.MeshAtts.smoothingLevel = vis.MeshAtts.None # None, Fast, High
vis.MeshAtts.pointSizeVarEnabled = 0
vis.MeshAtts.pointSizeVar = "default"
vis.MeshAtts.pointType = vis.MeshAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.MeshAtts.showInternal = 0
vis.MeshAtts.pointSizePixels = 10
vis.MeshAtts.opacity = 1
vis.SetPlotOptions(vis.MeshAtts)
vis.DrawPlots()
# Iterate through frames
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = _outputDir
vis.SaveWindowAtts.fileName = _outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 3000
vis.SaveWindowAtts.height = 3000
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
vis.CloseDatabase(databaseName2)
# Make the movie:
#subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName)
pyVisitPath = "pyVisit/"
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh")
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName)
framerate = "10"
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
_outputDir, _outputFileName, framerate
])
# Delete the point vtk file:
os.remove(os.getcwd() + "/" + inputFileName2)
def visit_config(geometry_file, data_file, args):
"""
Convert geometry file to stl, convert data file to vtk, load each file
into VisIt, and create and load a session file containing four plot windows.
1) A cube with a slice through an octant.
2) XY plane slice through the centroid.
3) XZ plane slice through the centroid.
4) YZ plane slice through the centroid.
Each window has a mesh plot with the "STL_mesh" variable, a Pseudocolor plot
with the "TALLY_TAG" variable, and the second, third, and fourth windows have
Contour plots with the "ERROR_TAG" variable. If the user has indicated to,
launch VisIt and load the session file.
Input:
______
geometry_file: h5m file
User supplied geometry file.
data_file: h5m or vtk file
User supplied data file.
args: Namespace
User supplied geometry file location, data file location, and
indication if the user wants images of the plot windows with a
timestamp and the session file saved and opened in VisIt.
Returns:
________
None
"""
# Create a list of dictionaries indicating the data, plot, and variable in VisIt.
Files = [{
"file_name": data_file,
"plot_type": "Pseudocolor",
"data_tag": "TALLY_TAG"
}, {
"file_name": data_file,
"plot_type": "Contour",
"data_tag": "ERROR_TAG"
}, {
"file_name": geometry_file,
"plot_type": "Mesh",
"data_tag": "STL_mesh"
}]
# Launch VisIt and add appropriate plots.
Vi.LaunchNowin()
for file in Files:
Vi.OpenDatabase(file["file_name"])
Vi.AddPlot(file["plot_type"], file["data_tag"])
# Hide the contour plot in the first plot window.
Vi.SetActivePlots(1)
Vi.HideActivePlots()
# Create the plot of the cube by activating the mesh and pseudocolor plots.
Vi.SetActivePlots((0, 2))
# Set the view normal to the first octant.
v = Vi.GetView3D()
v.viewNormal = (1, 1, 1)
Vi.SetView3D(v)
# Apply a clip through the first octant.
Vi.AddOperator("Clip")
c = Vi.ClipAttributes()
c.plane1Origin = (40, 40, 40)
c.plane1Normal = (1, 1, 1)
Vi.SetOperatorOptions(c)
# Include the CNERG logo in the bottom left corner of the plot.
image = Vi.CreateAnnotationObject("Image")
image.image = os.path.dirname(os.path.abspath(__file__)) + "/cnerg.jpg"
image.position = (0.02, 0.02)
image.width = 10
image.height = 10
Vi.DrawPlots()
if args.images:
if args.timestamp:
attributes = Vi.GetAnnotationAttributes()
attributes.userInfoFlag = 0
Vi.SetAnnotationAttributes(attributes)
Vi.SaveWindow()
# Create the second plot of the XY plane slice.
plane_slice_plotting(2, 2, "XY Plane", args.images, args.timestamp)
# Create the third plot of the XZ plane slice.
plane_slice_plotting(3, 1, "XZ Plane", args.images, args.timestamp)
# Create the fourth plot of the YZ plane slice.
plane_slice_plotting(4, 0, "ZY Plane", args.images, args.timestamp)
# Display the four windows in a 2x2 grid.
Vi.SetWindowLayout(4)
# Save the session file with the default VisIt output to the current directory.
visit_output = "VisitDefaultOutput.session"
Vi.SaveSession(visit_output)
Vi.Close()
# Retrieve the path to the VisIt session file.
session_file_path = os.path.join(os.getcwd(), visit_output)
# If the user has indicated to, open the session file with the VisIt GUI.
if args.openvisit:
os.system("visit -sessionfile {} &".format(session_file_path))
# If the user has indicated to, remove the session file after VisIt has opened.
if not args.sessionfile:
os.system("sleep 10; rm {}".format(session_file_path))
def make_moving_frame_of_reference_movie(x_begin,
x_end,
y_begin,
y_end,
speed_x,
speed_y,
variable_name,
minThreshold,
maxThreshold,
input_directory,
input_file_name,
output_directory,
output_file_name,
color_table="hot_desaturated",
start_frame=-1,
end_frame=-1,
frame_skip_dt=1.0):
'''
Function for making a movie with a moving frame of reference.
:param x_begin The starting frame's beginning x-coordinate
:param x_end The starting frame's ending x-coordinate
:param y_begin The starting frame's beginning x-coordinate
:param y_end The starting frame's ending y-coordinate
:param speed_x The speed at which the frame moves in the x direction
:param speed_y The speed at which the frame moves in the y direction
:param variable_name Name of the variable (For ex \"rho\")
:param minThreshold Minimum threshold for the variable
:param maxThreshold Maximum threshold for the variable
:param input_directory The path to the directory where the files are
:param input_file_name Name of the files (For ex \"bulk.*.silo\")
:param output_directory Directory where to output the movie
:param output_file_name Name of the outputted file (For ex \"RHOMOVIE\")
:param color_table Name of the color table (\"hot_desaturated\" by default)
:param start_frame Starting frame for the movie (if -1, equals 0, -1 by default)
:param end_frame Ending frame for the movie (if -1, equals the last frame, -1 by default)
:param frame_skip_dt The number of seconds one skip in frame equals (1.0 by default) (Note: This may change depending on the run and should always be checked)
'''
# OPTIONS
#################################################################
# Input the boundary box for starting coordinates (Starting values)
startX = x_begin # The left x-boundary of the box
endX = x_end # The right x-boundary of the box
startY = y_begin # The bottom y-boundary of the box
endY = y_end # The upper y-boundary of the box
# Input frame properties
startFrame = start_frame # Note: if startFrame is set to -1 the start frame gets set to 0
endFrame = end_frame # Note: if endFrame is set to -1 the endFrame is automatically the number of frames in the database
frameInSeconds = frame_skip_dt # Set how many seconds one frame skip is
# Input speed in x and y direction
speedX = speed_x # Meters per second
speedY = speed_y # Meters per second
# Input variable
variableName = variable_name
minVariableValue = minThreshold
maxVariableValue = maxThreshold
colorTableName = color_table
# Input directory and file names
outputDir = output_directory # Set the output directory (Where .png s are saved)
outputFileName = output_file_name # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, .
databaseName = "localhost:" + input_directory + input_file_name + " database" # For navigating to the silo files
# visitBinDirectory = "/usr/local/visit/bin" #Nevermind this
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
# Launch visit
visitBinDirectory = '/home/htest/visit/bin'
vis.LaunchNowin(vdir=visitBinDirectory)
dx = speedX * frameInSeconds # Note: This is in meters per frame!
dy = speedY * frameInSeconds # Note: This is in meters per frame!
#Set up window and annotations
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", variableName, 1, 1)
vis.SetActivePlots(0)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = color_table
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.SetActivePlots(0)
vis.AddOperator("Slice", 1)
vis.AddOperator("Threshold", 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("Boundary_type")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (1)
vis.ThresholdAtts.upperBounds = (1)
vis.ThresholdAtts.defaultVarName = variableName
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.ThresholdAtts = vis.ThresholdAttributes()
vis.ThresholdAtts.outputMeshType = 0
vis.ThresholdAtts.listedVarNames = ("Boundary_type")
vis.ThresholdAtts.zonePortions = (1)
vis.ThresholdAtts.lowerBounds = (1)
vis.ThresholdAtts.upperBounds = (1)
vis.ThresholdAtts.defaultVarName = variableName
vis.ThresholdAtts.defaultVarIsScalar = 1
vis.SetOperatorOptions(vis.ThresholdAtts, 1)
vis.SetActivePlots(0)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
if endFrame == -1:
endFrame = vis.TimeSliderGetNStates() - 1
if startFrame == -1:
startFrame = 0
# Iterate through frames
for i in xrange(startFrame, endFrame + 1):
vis.SetTimeSliderState(i)
frame = i - startFrame
vis.View2DAtts = vis.View2DAttributes()
vis.View2DAtts.windowCoords = (startX + frame * dx, endX + frame * dx,
startY + frame * dy, endY + frame * dy)
vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto
vis.View2DAtts.fullFrameAutoThreshold = 100
vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG
vis.View2DAtts.windowValid = 1
vis.SetView2D(vis.View2DAtts)
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = outputDir
vis.SaveWindowAtts.fileName = outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 1024
vis.SaveWindowAtts.height = 1024
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
framerate = 7
subprocess.call([
pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh",
outputDir, outputFileName, framerate
])
"file_name": data_file,
"plot_type": "Pseudocolor",
"data_tag": "TALLY_TAG"
}, {
"file_name": data_file,
"plot_type": "Contour",
"data_tag": "ERROR_TAG"
}]
Vi.LaunchNowin()
for file in Files:
Vi.OpenDatabase(file["file_name"])
Vi.AddPlot(file["plot_type"], file["data_tag"])
# Hide the contour plot in the first plot window.
Vi.SetActivePlots(2)
Vi.HideActivePlots()
# Create the plot of the cube by activating the mesh and pseudocolor plots.
Vi.SetActivePlots((0, 1))
# Set the view normal to the first octant.
v = Vi.GetView3D()
v.viewNormal = (1, 1, 1)
Vi.SetView3D(v)
# Apply a clip through the first octant.
Vi.AddOperator("Clip")
c = Vi.ClipAttributes()
c.plane1Origin = (40, 40, 40)
c.plane1Normal = (1, 1, 1)
def make_movie( variableName, minValue, maxValue, inputDirectory, inputFileName, outputDirectory, outputFileName, colorTable="hot_desaturated", startFrame=-1, endFrame=-1 ):
'''
Function for making a movie
Arguments:
:param variableName Name of the variable
:param minValue Minimum value of the variable
:param maxValue Maximum value of the variable
:param inputDirectory Path to input vlsv/silo files
:param inputFileName Name of the file(s) so for example if the filenames are bulk.0000.silo, bulk.0001.silo, .. then inputFileName=\"bulk.*.silo\""
:param outputDirectory Path to output directory
:param outputFileName Name of the output file
:param colorTable="hot_desaturated" Color table for the plots
:param startFrame=-1 Starting frame of the movie (-1 equals 0)
:param endFrame=-1 Starting frame of the movie (-1 equals last frame)
'''
# OPTIONS
#################################################################
# Input frame properties
_startFrame = startFrame # Note: if _startFrame is set to -1 the start frame gets set to 0
_endFrame = endFrame # Note: if _endFrame is set to -1 the _endFrame is automatically the number of frames in the database
# Input variable
_variableName = variableName
minVariableValue = minValue
maxVariableValue = maxValue
colorTableName = colorTable
# Input directory and file names
#_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved)
_outputDir = outputDirectory
#_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, ..
_outputFileName = outputFileName # The file names for the png files.
#databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files
databaseName = "localhost:" + inputDirectory + inputFileName + " database" # For navigating to the silo files
# Note: a slice of the plot in z-axis is taken automatically
#################################################################
# LaunchNowin(vdir=visitBinDirectory)
#dx = speedX * frameInSeconds # Note: This is in meters per frame!
#dy = speedY * frameInSeconds # Note: This is in meters per frame!
#LaunchNowin(vdir="/usr/local/visit/bin")
#Set up window and annotations
#vis.LaunchNowin(vdir="/usr/local/visit/bin")
vis.OpenDatabase(databaseName, 0)
#Load settings
visSettings.load_visit_settings()
vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE
vis.SetActivePlots(0)
vis.PseudocolorAtts = vis.PseudocolorAttributes()
vis.PseudocolorAtts.legendFlag = 1
vis.PseudocolorAtts.lightingFlag = 1
vis.PseudocolorAtts.minFlag = 1
vis.PseudocolorAtts.maxFlag = 1
vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal
vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew
vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot
vis.PseudocolorAtts.min = minVariableValue
vis.PseudocolorAtts.max = maxVariableValue
vis.PseudocolorAtts.pointSize = 0.05
vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere
vis.PseudocolorAtts.skewFactor = 1
vis.PseudocolorAtts.opacity = 1
vis.PseudocolorAtts.colorTableName = colorTableName
vis.PseudocolorAtts.invertColorTable = 0
vis.PseudocolorAtts.smoothingLevel = 0
vis.PseudocolorAtts.pointSizeVarEnabled = 0
vis.PseudocolorAtts.pointSizeVar = "default"
vis.PseudocolorAtts.pointSizePixels = 2
vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH
vis.PseudocolorAtts.lineWidth = 0
vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable
vis.SetPlotOptions(vis.PseudocolorAtts)
vis.SetActivePlots(0)
vis.AddOperator("Slice", 1)
vis.SetActivePlots(0)
vis.SliceAtts = vis.SliceAttributes()
vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node
vis.SliceAtts.originPoint = (0, 0, 0)
vis.SliceAtts.originIntercept = 0
vis.SliceAtts.originPercent = 0
vis.SliceAtts.originZone = 0
vis.SliceAtts.originNode = 0
vis.SliceAtts.normal = (0, 0, 1)
vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi
vis.SliceAtts.upAxis = (0, 1, 0)
vis.SliceAtts.project2d = 1
vis.SliceAtts.interactive = 1
vis.SliceAtts.flip = 0
vis.SliceAtts.originZoneDomain = 0
vis.SliceAtts.originNodeDomain = 0
vis.SliceAtts.meshName = "SpatialGrid"
vis.SliceAtts.theta = 0
vis.SliceAtts.phi = 90
vis.SetOperatorOptions(vis.SliceAtts, 1)
vis.DrawPlots()
if _endFrame == -1:
_endFrame = vis.TimeSliderGetNStates() - 1
if _startFrame == -1:
_startFrame = 0
# Iterate through frames
for i in range(_startFrame, _endFrame+1):
vis.SetTimeSliderState(i)
frame = i - _startFrame
vis.SaveWindowAtts = vis.SaveWindowAttributes()
vis.SaveWindowAtts.outputToCurrentDirectory = 0
vis.SaveWindowAtts.outputDirectory = _outputDir
vis.SaveWindowAtts.fileName = _outputFileName
vis.SaveWindowAtts.family = 1
vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY
vis.SaveWindowAtts.width = 3000
vis.SaveWindowAtts.height = 3000
vis.SaveWindowAtts.screenCapture = 0
vis.SaveWindowAtts.saveTiled = 0
vis.SaveWindowAtts.quality = 100
vis.SaveWindowAtts.progressive = 0
vis.SaveWindowAtts.binary = 0
vis.SaveWindowAtts.stereo = 0
vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate
vis.SaveWindowAtts.forceMerge = 0
vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions
vis.SaveWindowAtts.advancedMultiWindowSave = 0
vis.SetSaveWindowAttributes(vis.SaveWindowAtts)
vis.SaveWindow()
vis.DeleteActivePlots()
vis.CloseDatabase(databaseName)
# Make the movie:
#subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName)
pyVisitPath = "pyVisit/"
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh")
#subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName)
framerate = "10"
subprocess.call([pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", _outputDir, _outputFileName, framerate])
def createPseudocolor(self,
varname,
display_name=None,
cmap=None,
limits=None,
linewidth=None,
legend=True,
alpha=False):
"""Generic creation of pseudocolor"""
if display_name is None:
display_name = vrc.renameScalar(varname)
if "temperature" in display_name:
display_name = display_name.replace("[K]", "[C]")
print "defining alias: %s = %s" % (display_name, varname)
v.DefineScalarExpression(display_name, "<%s> - 273.15" % varname)
elif display_name != varname:
print "defining alias: %s = %s" % (display_name, varname)
v.DefineScalarExpression(display_name, '<' + varname + '>')
v.AddPlot('Pseudocolor', display_name)
pa = v.PseudocolorAttributes()
# limits
if limits is None:
limits = vrc.getLimits(varname)
if limits is not None:
min = limits[0]
max = limits[1]
if min is not None:
pa.minFlag = 1
pa.min = min
if max is not None:
pa.maxFlag = 1
pa.max = max
# opacity
if alpha:
pa.opacity = 0
pa.opacityType = pa.ColorTable
# colormap
if cmap is not None:
reverse = cmap.endswith("_r")
if reverse:
cmap = cmap.strip("_r")
pa.invertColorTable = 1
pa.colorTableName = cmap
# linewidth for 2D
if linewidth is None:
linewidth = vrc.rcParams['pseudocolor.linewidth']
pa.lineWidth = linewidth
# turn off legend for 2D surf
if not legend:
pa.legendFlag = 0
v.SetActivePlots(len(self.plots) + 1)
v.SetPlotOptions(pa)
pname = v.GetPlotList().GetPlots(v.GetNumPlots() - 1).plotName
if legend:
plot = Plot(pname, 'Pseudocolor', pa, display_name)
else:
plot = Plot(pname, 'Pseudocolor', pa)
self.plots.append(plot)
return plot
"""Script for saving the changed attribute files """ import visit as vi view_attr_file = 'view_attr.xml' annotation_attr_file = 'anno_attr.xml' plasma_attr_file = 'plasma_attr.xml' wave_attr_file = 'wave_attr.xml' vi.SaveAttribute(view_attr_file, vi.GetView3D()) vi.SaveAttribute(annotation_attr_file, vi.GetAnnotationAttributes()) vi.SetActivePlots(0) vi.SaveAttribute(plasma_attr_file, vi.GetPlotOptions()) vi.SetActivePlots(1) vi.SaveAttribute(wave_attr_file, vi.GetPlotOptions())
