def isosurfacePlot(self, stay=False, samples=100, contours=50): visit.AddWindow() returned = [] if len(visit.ListPlots()) > 0: visit.SetActivePlots(0) visit.HideActivePlots() p = visit.PseudocolorAttributes() q = visit.ResampleAttributes() r = visit.IsosurfaceAttributes() q.samplesX = samples q.samplesY = samples q.samplesZ = samples r.contourNLevels = contours plot = visit.AddPlot("Pseudocolor", "Heat") visit.AddOperator("Resample") # visit.AddOperator("Isosurface") visit.SetOperatorOptions(q) visit.SetOperatorOptions(r) visit.SetPlotOptions(p) visit.DrawPlots() returned.append(visit.SaveWindow()) count = 0 visit.AddOperator("Isosurface") visit.DrawPlots() time.sleep(60) returned.append(visit.SaveWindow()) return returned
def plane_slice_plotting(window_number, axis_number, label, images, timestamp): """ Copy the Mesh, Pseudocolor, and Contour plots into a new VisIt window and slice through the proper axis. Input: ______ window_number: int The number of the window to open (2,3, or 4). axis_number: int The number of the axis to slice through (0 for X, 1 for Y, 2 for Z). label: str The title of the plane slice. images: boolean Whether or not to save images of the plot windows. timestamp: boolean Whether or not to keep the timestamp on plot window images. Returns: ________ none """ # Open a new window with all three plots. Vi.AddWindow() Vi.CopyPlotsToWindow(1, window_number) # Create the plane slice plot by activating the mesh, pseudocolor, and contour plots. Vi.SetActiveWindow(window_number) Vi.SetActivePlots((0, 1, 2)) # Remove the clip and slice operators from previous plot windows. Vi.RemoveAllOperators() # Add a slice through the proper axis. Vi.AddOperator("Slice", 1) s = Vi.SliceAttributes() s.axisType = axis_number Vi.SetOperatorOptions(s) # Include a label for each plane slice plot. banner = Vi.CreateAnnotationObject("Text2D") banner.position = (0.45, 0.92) banner.text = label banner.height = 0.05 # Include the CNERG logo in the bottom left corner of the plot. image = Vi.CreateAnnotationObject("Image") image.image = os.path.dirname(os.path.abspath(__file__)) + "/cnerg.jpg" image.position = (0.02, 0.02) image.width = 10 image.height = 10 Vi.DrawPlots() if images: if timestamp: attributes = Vi.GetAnnotationAttributes() attributes.userInfoFlag = 0 Vi.SetAnnotationAttributes(attributes) Vi.SaveWindow()
def draw(self): print "drawing window %d of dimension %d"%(self.i,self.dim) v.SetActiveWindow(self.i) v.SetAnnotationAttributes(self.annot) if self.dim == 2: # add the slice assert self._slice is not None for i,plot in enumerate(self.plots): sliced = False for op in plot.operators: if "slice" == op.oname: sliced = True if not sliced: print "slicing plot %d..."%i v.SetActivePlots(i) v.AddOperator("Slice") sa = self._slice.toAttributes() v.SetOperatorOptions(sa) plot.operators.append(Operator("slice", "Slice", sa)) if self.exaggeration is not None: print "exaggerating..." self._exaggerateVertical() # set the plot options for i, plot in enumerate(self.plots): print "setting plot options for plot %i..."%i v.SetActivePlots(i) v.SetPlotOptions(plot.patts) # set the view print "setting the view..." if self.dim == 2: v.SetView2D(self.view) else: v.SetView3D(self.view) print "drawing..." v.DrawPlots()
def pseudocolorPlot(self): visit.AddWindow() returned = [] if len(visit.ListPlots()) > 0: visit.SetActivePlots(0) visit.HideActivePlots() p = visit.PseudocolorAttributes() plot = visit.AddPlot("Pseudocolor", "Heat") visit.SetPlotOptions(p) visit.DrawPlots() return visit.SaveWindow()
def write_plots(f): f.write('# Create plots\n') pL = visit.GetPlotList() activePlots = [] for i in range(visit.GetNumPlots()): plot = pL.GetPlots(i) if plot.activeFlag: activePlots = activePlots + [i] plotName = visit.PlotPlugins()[plot.plotType] visit.SetActivePlots(i) f.write('# Create plot %d\n' % (i + 1)) f.write('OpenDatabase("%s")\n' % plot.databaseName) f.write('AddPlot("%s", "%s", 0, 0)\n' % (plotName, plot.plotVar)) atts = eval("visit." + plotName + "Attributes(1)") defaultatts = eval("visit." + plotName + "Attributes()") if write_state_object_diffs(f, atts, defaultatts, "atts"): f.write('SetPlotOptions(atts)\n') else: f.write('#SetPlotOptions(atts)\n') opIndex = 0 for op in plot.operatorNames: f.write('AddOperator("%s", 0)\n' % op) opAtts = visit.GetOperatorOptions(opIndex) defaultAtts = eval("visit." + object_type(opAtts) + "()") if write_state_object_diffs(f, opAtts, defaultAtts, "opAtts"): f.write('SetOperatorOptions(opAtts)\n') else: f.write('#SetOperatorOptions(opAtts)\n') opIndex += 1 # Set the SIL restriction write_sil(f) f.write('\n') if len(activePlots) > 1: f.write('SetActivePlots(%s)\n\n' % str(activePlots)) visit.SetActivePlots(activePlots) elif len(activePlots) == 1: f.write('SetActivePlots(%d)\n\n' % activePlots[0]) visit.SetActivePlots(activePlots[0])
def _exaggerateVertical(self): if self.dim == 3: self.view.axis3DScaleFlag = 1 self.view.axis3DScales = (self.view.axis3DScales[0], self.view.axis3DScales[1], self.exaggeration) else: for i,plot in enumerate(self.plots): done = False for op in plot.operators: if "exaggerate_vertical" == op.oname: done = True if not done: print "transforming plot %d..."%i tr = v.TransformAttributes() tr.doScale = 1 tr.scaleY = self.exaggeration v.SetActivePlots(i) v.AddOperator("Transform") v.SetOperatorOptions(tr) plot.operators.append(Operator("exaggerate_vertical", "Transform", tr))
def scatterPlot(self, coords=["var00", "var01", "var02", "var03"], colorTable="hot", pixelSize=5, stay=False): visit.AddWindow() if len(visit.ListPlots()) > 0: visit.SetActivePlots(0) visit.HideActivePlots() plot = visit.AddPlot("Scatter", coords[0]) p = visit.ScatterAttributes() # Variables if coords[1]: p.var2 = coords[1] if coords[2]: p.var3 = coords[2] if coords[3]: p.var4 = coords[3] #Role Variable Roles take intergers as inputs, not strings p.var1Role = 0 p.var2Role = 1 p.var3Role = 2 p.var4Role = 3 p.scaleCube = 0 #p.colorType = "ColorByColorTable" p.pointSizePixels = pixelSize p.colorTableName = colorTable #p.colorScaling = "Log" v = visit.GetView3D() v.viewNormal = (-0.571619, 0.405393, 0.713378) v.viewUp = (0.308049, 0.911853, -0.271346) visit.SetPlotOptions(p) visit.SetView3D(v) visit.DrawPlots() count = 0 time.sleep(5) return visit.SaveWindow()
def make_movie_auto(variableName, boundaryBox, vlsvFileName, inputDirectory, inputFileName, outputDirectory, outputFileName, colorTableName="hot_desaturated", startFrame=-1, endFrame=-1, thresholdCoefficient=0.6): ''' Function for making a movie Arguments: :param variableName Name of the variable :param boundaryBox Box for collecting min and max threshold (The movie will focus on that area) :param vlsvFileName Name of a vlsv file where the function collects the threshold for the boundary box :param inputDirectory Path to input vlsv/silo files :param inputFileName Name of the file(s) so for example if the filenames are bulk.0000.silo, bulk.0001.silo, .. then inputFileName=\"bulk.*.silo\"" :param outputDirectory Path to output directory :param outputFileName Name of the output file :param colorTableName="hot_desaturated" Color table for the plots :param thresholdCoefficient Sets the coefficient for a covariant collected from the values from boundary box. The lower this is, the more focused the movie will be on the boundary box area :param startFrame=-1 Starting frame of the movie (-1 equals 0) :param endFrame=-1 Starting frame of the movie (-1 equals last frame) ''' if thresholdCoefficient < 0: print("thresholdCoefficient must be non-negative!") return # OPTIONS ################################################################# # Input frame properties _startFrame = startFrame # Note: if _startFrame is set to -1 the start frame gets set to 0 _endFrame = endFrame # Note: if _endFrame is set to -1 the _endFrame is automatically the number of frames in the database # Input variable _variableName = variableName # Input directory and file names #_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved) _outputDir = outputDirectory #_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, .. _outputFileName = outputFileName # The file names for the png files. #databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files databaseName = "localhost:" + inputDirectory + inputFileName + " database" # For navigating to the silo files # Note: a slice of the plot in z-axis is taken automatically ################################################################# # Get the min and max values: # Get all cell ids within the boundary box: vlsvReader = VlsvReader(vlsvFileName) # Get global boundaries: # Get xmax, xmin and xcells_ini xmax = vlsvReader.read_parameter(name="xmax") xmin = vlsvReader.read_parameter(name="xmin") xcells = vlsvReader.read_parameter(name="xcells_ini") # Do the same for y ymax = vlsvReader.read_parameter(name="ymax") ymin = vlsvReader.read_parameter(name="ymin") ycells = vlsvReader.read_parameter(name="ycells_ini") # And for z zmax = vlsvReader.read_parameter(name="zmax") zmin = vlsvReader.read_parameter(name="zmin") zcells = vlsvReader.read_parameter(name="zcells_ini") #Calculate cell lengths: cell_lengths = np.array([(xmax - xmin) / (float)(xcells), (ymax - ymin) / (float)(ycells), (zmax - zmin) / (float)(zcells)]) # Get cell indices: cell_indice_bounds = np.array([ (int)(((float)(boundaryBox[0]) - xmin) / (float)(cell_lengths[0])), (int)(((float)(boundaryBox[1]) - xmin) / (float)(cell_lengths[0])), (int)(((float)(boundaryBox[2]) - ymin) / (float)(cell_lengths[1])), (int)(((float)(boundaryBox[3]) - ymin) / (float)(cell_lengths[1])), (int)(((float)(boundaryBox[4]) - zmin) / (float)(cell_lengths[2])), (int)(((float)(boundaryBox[5]) - zmin) / (float)(cell_lengths[2])) ]) # Get every cell id within the boundary box: cellids = [] cell_indice = np.array( [cell_indice_bounds[0], cell_indice_bounds[2], cell_indice_bounds[4]]) while True: cellids.append(cell_indice[0] + cell_indice[1] * xcells + cell_indice[2] * xcells * ycells + 1) if cell_indice[0] < cell_indice_bounds[1]: cell_indice[0] = cell_indice[0] + 1 elif cell_indice[1] < cell_indice_bounds[3]: cell_indice[1] = cell_indice[1] + 1 cell_indice[0] = cell_indice_bounds[0] elif cell_indice[2] < cell_indice_bounds[5]: cell_indice[2] = cell_indice[2] + 1 cell_indice[1] = cell_indice_bounds[1] cell_indice[0] = cell_indice_bounds[0] else: # Indice out of bounds -- got all cell ids break # Convert cell ids into set: cellids = Set(cellids) cellidlocations = [] # Get all of the cell ids locations: allcellids = vlsvReader.read(name="SpatialGrid", tag="MESH") for i in range(len(allcellids)): if allcellids[i] in cellids: #This cell id is within the user-given boundary cellidlocations.append(allcellids[i]) # Get all of the values: allvalues = vlsvReader.read_variables(name=_variableName) values = [] # Get the values of the cell ids within the boundary for i in cellidlocations: values.append(allvalues[i]) # We now have all the cell ids (and their locations in the arrays) from the area, set min and max thresholds: meanValue = np.mean(values) standardDeviationValue = np.std(values) maxValue = meanValue + ( float)(thresholdCoefficient) * standardDeviationValue minValue = meanValue - ( float)(thresholdCoefficient) * standardDeviationValue # Put threshold values: minVariableValue = minValue maxVariableValue = maxValue # LaunchNowin(vdir=visitBinDirectory) #dx = speedX * frameInSeconds # Note: This is in meters per frame! #dy = speedY * frameInSeconds # Note: This is in meters per frame! #LaunchNowin(vdir="/usr/local/visit/bin") #Set up window and annotations #vis.LaunchNowin(vdir="/usr/local/visit/bin") vis.OpenDatabase(databaseName, 0) #Load settings visSettings.load_visit_settings() vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE vis.SetActivePlots(0) vis.PseudocolorAtts = vis.PseudocolorAttributes() vis.PseudocolorAtts.legendFlag = 1 vis.PseudocolorAtts.lightingFlag = 1 vis.PseudocolorAtts.minFlag = 1 vis.PseudocolorAtts.maxFlag = 1 vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot vis.PseudocolorAtts.min = minVariableValue vis.PseudocolorAtts.max = maxVariableValue vis.PseudocolorAtts.pointSize = 0.05 vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.PseudocolorAtts.skewFactor = 1 vis.PseudocolorAtts.opacity = 1 vis.PseudocolorAtts.colorTableName = colorTableName vis.PseudocolorAtts.invertColorTable = 0 vis.PseudocolorAtts.smoothingLevel = 0 vis.PseudocolorAtts.pointSizeVarEnabled = 0 vis.PseudocolorAtts.pointSizeVar = "default" vis.PseudocolorAtts.pointSizePixels = 2 vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.PseudocolorAtts.lineWidth = 0 vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable vis.SetPlotOptions(vis.PseudocolorAtts) vis.SetActivePlots(0) vis.AddOperator("Slice", 1) vis.SetActivePlots(0) vis.SliceAtts = vis.SliceAttributes() vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node vis.SliceAtts.originPoint = (0, 0, 0) vis.SliceAtts.originIntercept = 0 vis.SliceAtts.originPercent = 0 vis.SliceAtts.originZone = 0 vis.SliceAtts.originNode = 0 vis.SliceAtts.normal = (0, 0, 1) vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi vis.SliceAtts.upAxis = (0, 1, 0) vis.SliceAtts.project2d = 1 vis.SliceAtts.interactive = 1 vis.SliceAtts.flip = 0 vis.SliceAtts.originZoneDomain = 0 vis.SliceAtts.originNodeDomain = 0 vis.SliceAtts.meshName = "SpatialGrid" vis.SliceAtts.theta = 0 vis.SliceAtts.phi = 90 vis.SetOperatorOptions(vis.SliceAtts, 1) vis.DrawPlots() if _endFrame == -1: _endFrame = vis.TimeSliderGetNStates() - 1 if _startFrame == -1: _startFrame = 0 # Iterate through frames for i in range(_startFrame, _endFrame + 1): vis.SetTimeSliderState(i) frame = i - _startFrame vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = _outputDir vis.SaveWindowAtts.fileName = _outputFileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = 3000 vis.SaveWindowAtts.height = 300 vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.DeleteActivePlots() vis.CloseDatabase(databaseName) # Make the movie: #subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName) pyVisitPath = "pyVisit/" #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh") #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName) frameRate = "10" subprocess.call([ pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", _outputDir, _outputFileName, frameRate ])
import matplotlib.pyplot as plt from mpl_toolkits.mplot3d import Axes3D from MeshClass import * from DataClass import * from CaseClass import * Loc = "OpenFoamCases/" Files = ['elbow/', 'Coutte_Flow_40x40-FixedTemperature/', 'forwardStep/'] Loc = Loc + Files[0] # Reading Mesh Data and Evaluating the initail points case = Case() case.loadOpenFoamFile(Loc) case.print_output_vtk() # visit sys.path.append("/home/neo/visit/2.11.0/linux-x86_64/lib/site-packages") import visit as vs vs.Launch() vs.OpenDatabase("Results/results-time-1.vtk") vs.AddPlot("Pseudocolor", 'X-Velocity') vs.AddPlot("Pseudocolor", "Pressure") vs.SetActivePlots(0) vs.HideActivePlots() vs.DrawPlots() d = input('Press anything to quit')
def make_distribution_movie(cellids, rotated, inputDirectory, outputDirectory, outputFileName, zoom=1.0, viewNormal=[0.488281, 0.382966, -0.784167], minThreshold=1e-18, maxThreshold=1e37): '''Makes a distribution movie of some given distribution data Example usage: make_distribution_movie(cellids=[18302, 19432, 19042], rotated=True, inputDirectory=\"/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/\", outputDirectory=\"/home/hannukse/MOVIES/\", outputFileName=\"testmovie\", zoom=0.8, viewNormal=[0.488281, 0.382966, -0.784167], minThreshold=1e-17, maxThreshold=1.2e37) Note: viewNormal determines the angle of view (straight from visit) ''' if len(viewNormal) != 3: print "ERROR, INVALID VIEWNORMAL LENGTH, SHOULD BE 3" return for cell in sorted(cellids): # OPTIONS ########################################################### cellid = str(cell) #databaseName = "localhost:/home/hannukse/meteo/lustre/tmp/hannuksela/AAM/velgrid.rotated." + cellid + ".*.silo database" if rotated == True: rotateFix = "rotated." else: rotateFix = "" inputFileName = "velgrid." + rotateFix + cellid + ".*.silo" databaseName = "localhost:" + inputDirectory + inputFileName + " database" outputDir = outputDirectory fileName = outputFileName + "_" + cellid + "_" WIDTH = 3000 HEIGHT = 3000 # Threshold values: # TODO: USE VLSV READER TO AUTOMATE THIS minimumThreshold = minThreshold maximumThreshold = maxThreshold ########################################################### vis.OpenDatabase(databaseName, 0) #Load settings visSettings.load_visit_settings() #Make a plot vis.AddPlot("Pseudocolor", "avgs", 1, 1) vis.SetActivePlots(0) vis.AddOperator("Threshold", 1) vis.ThresholdAtts = vis.ThresholdAttributes() vis.ThresholdAtts.outputMeshType = 0 vis.ThresholdAtts.listedVarNames = ("default") vis.ThresholdAtts.zonePortions = (1) vis.ThresholdAtts.lowerBounds = (minimumThreshold) vis.ThresholdAtts.upperBounds = (maximumThreshold) vis.ThresholdAtts.defaultVarName = "avgs" vis.ThresholdAtts.defaultVarIsScalar = 1 vis.SetOperatorOptions(vis.ThresholdAtts, 1) vis.DrawPlots() # Begin spontaneous state vis.View3DAtts = vis.View3DAttributes() vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1], viewNormal[2]) vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891) vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841) vis.View3DAtts.viewAngle = 30 vis.View3DAtts.parallelScale = 1.45614e+06 vis.View3DAtts.nearPlane = -2.91228e+06 vis.View3DAtts.farPlane = 2.91228e+06 vis.View3DAtts.imagePan = (0, 0) vis.View3DAtts.imageZoom = zoom vis.View3DAtts.perspective = 1 vis.View3DAtts.eyeAngle = 2 vis.View3DAtts.centerOfRotationSet = 0 vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891) vis.View3DAtts.axis3DScaleFlag = 0 vis.View3DAtts.axis3DScales = (1, 1, 1) vis.View3DAtts.shear = (0, 0, 1) vis.SetView3D(vis.View3DAtts) # End spontaneous state vis.ViewCurveAtts = vis.ViewCurveAttributes() vis.ViewCurveAtts.domainCoords = (0, 1) vis.ViewCurveAtts.rangeCoords = (0, 1) vis.ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95) vis.ViewCurveAtts.domainScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG vis.ViewCurveAtts.rangeScale = vis.ViewCurveAtts.LINEAR # LINEAR, LOG vis.SetViewCurve(vis.ViewCurveAtts) vis.View2DAtts = vis.View2DAttributes() vis.View2DAtts.windowCoords = (0, 1, 0, 1) vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95) vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto vis.View2DAtts.fullFrameAutoThreshold = 100 vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG vis.View2DAtts.windowValid = 0 vis.SetView2D(vis.View2DAtts) vis.View3DAtts = vis.View3DAttributes() vis.View3DAtts.viewNormal = (viewNormal[0], viewNormal[1], viewNormal[2]) vis.View3DAtts.focus = (-634.56, 91.3781, -13.7891) vis.View3DAtts.viewUp = (-0.102795, 0.917551, 0.3841) vis.View3DAtts.viewAngle = 30 vis.View3DAtts.parallelScale = 1.45614e+06 vis.View3DAtts.nearPlane = -2.91228e+06 vis.View3DAtts.farPlane = 2.91228e+06 vis.View3DAtts.imagePan = (0, 0) vis.View3DAtts.imageZoom = zoom vis.View3DAtts.perspective = 1 vis.View3DAtts.eyeAngle = 2 vis.View3DAtts.centerOfRotationSet = 0 vis.View3DAtts.centerOfRotation = (-634.56, 91.3781, -13.7891) vis.View3DAtts.axis3DScaleFlag = 0 vis.View3DAtts.axis3DScales = (1, 1, 1) vis.View3DAtts.shear = (0, 0, 1) vis.SetView3D(vis.View3DAtts) vis.ViewAxisArrayAtts = vis.ViewAxisArrayAttributes() vis.ViewAxisArrayAtts.domainCoords = (0, 1) vis.ViewAxisArrayAtts.rangeCoords = (0, 1) vis.ViewAxisArrayAtts.viewportCoords = (0.15, 0.9, 0.1, 0.85) vis.SetViewAxisArray(vis.ViewAxisArrayAtts) for i in range(0, vis.GetDatabaseNStates()): vis.SetTimeSliderState(i) vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = outputDir vis.SaveWindowAtts.fileName = fileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = WIDTH vis.SaveWindowAtts.height = HEIGHT vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.DeleteActivePlots() vis.CloseDatabase(databaseName) # Make the movie: framerate = 5 subprocess.call([ pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", outputDir, fileName, framerate ])
k = k + 1000 if k < kMax: tl.visible = 0 visit.DeleteAllPlots() visit.CloseDatabase(filename) # tl.visible = 0 # Here is the main windowA = visit.SaveWindowAttributes() windowA.format = windowA.JPEG windowA.progressive = 1 windowA.width = 807 windowA.height = 908 windowA.fileName = "fdensity" #windowA.outputDirectory = "/global/u2/e/efeibush/gtc/flow/flow3/compare/densityimages" windowA.outputToCurrentDirectory = 1 #windowA.screenCapture = 1 visit.SetSaveWindowAttributes(windowA) #a = visit.ListPlots() b = visit.SetActivePlots(0) anot = visit.GetAnnotationAttributes() anot.databaseInfoFlag = 0 visit.SetAnnotationAttributes(anot) viewit()
def draw_point_picture(variableName, minValue, maxValue, inputDirectory, inputFileName, coordinate, outputDirectory, outputFileName, colorTable="hot_desaturated"): ''' Function for making a visit plot with a point Arguments: :param variableName Name of the variable :param minValue Minimum value of the variable :param maxValue Maximum value of the variable :param inputDirectory Path to input vlsv/silo files :param inputFileName Name of the file, for example \"bulk.00000.silo\" :param coordinates Coordinates corresponding to the files so for example [ [[0,0,0], [0,1,0]], [[2,1,2], [2,1,4]] ] :param outputDirectory Path to output directory :param outputFileName Name of the output file :param colorTable="hot_desaturated" Color table for the plots ''' # OPTIONS ################################################################# # Input variable _variableName = variableName minVariableValue = minValue maxVariableValue = maxValue colorTableName = colorTable # Input directory and file names _outputDir = outputDirectory _outputFileName = outputFileName # The file names for the png files. databaseName = "localhost:" + inputDirectory + inputFileName # For navigating to the silo files # Note: a slice of the plot in z-axis is taken automatically ################################################################# inputFileName2 = "point.vtk" databaseName2 = "localhost:" + os.getcwd() + "/" + inputFileName2 currentPlot = 0 vis.OpenDatabase(databaseName, 0) #vis.ActiveDatabase("localhost:" + inputDirectory + inputFileName) #Load settings visSettings.load_visit_settings() vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE vis.SetActivePlots(currentPlot) vis.PseudocolorAtts = vis.PseudocolorAttributes() vis.PseudocolorAtts.legendFlag = 1 vis.PseudocolorAtts.lightingFlag = 1 vis.PseudocolorAtts.minFlag = 1 vis.PseudocolorAtts.maxFlag = 1 vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot vis.PseudocolorAtts.min = minVariableValue vis.PseudocolorAtts.max = maxVariableValue vis.PseudocolorAtts.pointSize = 0.05 vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.PseudocolorAtts.skewFactor = 1 vis.PseudocolorAtts.opacity = 1 vis.PseudocolorAtts.colorTableName = colorTableName vis.PseudocolorAtts.invertColorTable = 0 vis.PseudocolorAtts.smoothingLevel = 0 vis.PseudocolorAtts.pointSizeVarEnabled = 0 vis.PseudocolorAtts.pointSizeVar = "default" vis.PseudocolorAtts.pointSizePixels = 2 vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.PseudocolorAtts.lineWidth = 0 vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable vis.SetPlotOptions(vis.PseudocolorAtts) vis.AddOperator("Slice", 1) vis.SliceAtts = vis.SliceAttributes() vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node vis.SliceAtts.originPoint = (0, 0, 0) vis.SliceAtts.originIntercept = 0 vis.SliceAtts.originPercent = 0 vis.SliceAtts.originZone = 0 vis.SliceAtts.originNode = 0 vis.SliceAtts.normal = (0, 0, 1) vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi vis.SliceAtts.upAxis = (0, 1, 0) vis.SliceAtts.project2d = 1 vis.SliceAtts.interactive = 1 vis.SliceAtts.flip = 0 vis.SliceAtts.originZoneDomain = 0 vis.SliceAtts.originNodeDomain = 0 vis.SliceAtts.meshName = "SpatialGrid" vis.SliceAtts.theta = 0 vis.SliceAtts.phi = 90 vis.SetOperatorOptions(vis.SliceAtts, 1) vis.DrawPlots() create_point_vtk(fileName=inputFileName2, coordinates=coordinate) vis.OpenDatabase(databaseName2, 0) currentPlot = currentPlot + 1 vis.SetActivePlots(currentPlot) vis.AddPlot("Mesh", "mesh", 1, 1) vis.MeshAtts = vis.MeshAttributes() vis.MeshAtts.legendFlag = 1 vis.MeshAtts.lineStyle = vis.MeshAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.MeshAtts.lineWidth = 0 vis.MeshAtts.meshColor = (0, 0, 0, 255) vis.MeshAtts.outlineOnlyFlag = 0 vis.MeshAtts.errorTolerance = 0.01 vis.MeshAtts.meshColorSource = vis.MeshAtts.Foreground # Foreground, MeshCustom vis.MeshAtts.opaqueColorSource = vis.MeshAtts.Background # Background, OpaqueCustom vis.MeshAtts.opaqueMode = vis.MeshAtts.Auto # Auto, On, Off vis.MeshAtts.pointSize = 0.05 vis.MeshAtts.opaqueColor = (255, 255, 255, 255) vis.MeshAtts.smoothingLevel = vis.MeshAtts.None # None, Fast, High vis.MeshAtts.pointSizeVarEnabled = 0 vis.MeshAtts.pointSizeVar = "default" vis.MeshAtts.pointType = vis.MeshAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.MeshAtts.showInternal = 0 vis.MeshAtts.pointSizePixels = 25 vis.MeshAtts.opacity = 1 vis.SetPlotOptions(vis.MeshAtts) vis.DrawPlots() vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = _outputDir vis.SaveWindowAtts.fileName = _outputFileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = 3000 vis.SaveWindowAtts.height = 3000 vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.SetActivePlots((0, 1)) vis.DeleteActivePlots() vis.CloseDatabase(databaseName2) vis.CloseDatabase(databaseName)
def create_visit_point_movie(variableName, minValue, maxValue, inputDirectory, inputFileNames, coordinates, outputDirectory, outputFileName, colorTable="hot_desaturated"): ''' Function for making a movie Arguments: :param variableName Name of the variable :param minValue Minimum value of the variable :param maxValue Maximum value of the variable :param inputDirectory Path to input vlsv/silo files :param inputFileNames Name of the files for example [\"bulk.00000.silo\", \"bulk.00001.silo\"] :param coordinates Coordinates corresponding to the files so for example [ [[0,0,0], [0,1,0]], [[2,1,2], [2,1,4]] ] :param outputDirectory Path to output directory :param outputFileName Name of the output file :param colorTable="hot_desaturated" Color table for the plots ''' coordinates = [coordinates] for i in range(len(inputFileNames)): # OPTIONS ################################################################# # Input variable _variableName = variableName minVariableValue = minValue maxVariableValue = maxValue colorTableName = colorTable # Input directory and file names #_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved) _outputDir = outputDirectory #_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, .. _outputFileName = outputFileName # The file names for the png files. #databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files inputFileName = inputFileNames[i] databaseName = "localhost:" + inputDirectory + inputFileName # For navigating to the silo files # Note: a slice of the plot in z-axis is taken automatically ################################################################# # LaunchNowin(vdir=visitBinDirectory) #dx = speedX * frameInSeconds # Note: This is in meters per frame! #dy = speedY * frameInSeconds # Note: This is in meters per frame! #LaunchNowin(vdir="/usr/local/visit/bin") #Set up window and annotations #vis.LaunchNowin(vdir="/usr/local/visit/bin") inputFileName2 = "point.vtk" databaseName2 = "localhost:" + os.getcwd() + "/" + inputFileName2 vis.OpenDatabase(databaseName, 0) #vis.ActiveDatabase("localhost:" + inputDirectory + inputFileName) #Load settings visSettings.load_visit_settings() vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE vis.SetActivePlots(1) vis.PseudocolorAtts = vis.PseudocolorAttributes() vis.PseudocolorAtts.legendFlag = 1 vis.PseudocolorAtts.lightingFlag = 1 vis.PseudocolorAtts.minFlag = 1 vis.PseudocolorAtts.maxFlag = 1 vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot vis.PseudocolorAtts.min = minVariableValue vis.PseudocolorAtts.max = maxVariableValue vis.PseudocolorAtts.pointSize = 0.05 vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.PseudocolorAtts.skewFactor = 1 vis.PseudocolorAtts.opacity = 1 vis.PseudocolorAtts.colorTableName = colorTableName vis.PseudocolorAtts.invertColorTable = 0 vis.PseudocolorAtts.smoothingLevel = 0 vis.PseudocolorAtts.pointSizeVarEnabled = 0 vis.PseudocolorAtts.pointSizeVar = "default" vis.PseudocolorAtts.pointSizePixels = 2 vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.PseudocolorAtts.lineWidth = 0 vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable vis.SetPlotOptions(vis.PseudocolorAtts) vis.SetActivePlots(1) vis.AddOperator("Slice", 1) vis.SetActivePlots(1) vis.SliceAtts = vis.SliceAttributes() vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node vis.SliceAtts.originPoint = (0, 0, 0) vis.SliceAtts.originIntercept = 0 vis.SliceAtts.originPercent = 0 vis.SliceAtts.originZone = 0 vis.SliceAtts.originNode = 0 vis.SliceAtts.normal = (0, 0, 1) vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi vis.SliceAtts.upAxis = (0, 1, 0) vis.SliceAtts.project2d = 1 vis.SliceAtts.interactive = 1 vis.SliceAtts.flip = 0 vis.SliceAtts.originZoneDomain = 0 vis.SliceAtts.originNodeDomain = 0 vis.SliceAtts.meshName = "SpatialGrid" vis.SliceAtts.theta = 0 vis.SliceAtts.phi = 90 vis.SetOperatorOptions(vis.SliceAtts, 1) vis.DrawPlots() vis.SetActivePlots(0) for coordinate in coordinates[i]: print(str(coordinate)) create_point_vtk(fileName=inputFileName2, coordinates=coordinate) vis.OpenDatabase(databaseName2, 0) vis.AddPlot("Mesh", "mesh", 1, 1) vis.SetActivePlots(vis.GetNumPlots()) vis.MeshAtts = vis.MeshAttributes() vis.MeshAtts.legendFlag = 1 vis.MeshAtts.lineStyle = vis.MeshAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.MeshAtts.lineWidth = 0 vis.MeshAtts.meshColor = (0, 0, 0, 255) vis.MeshAtts.outlineOnlyFlag = 0 vis.MeshAtts.errorTolerance = 0.01 vis.MeshAtts.meshColorSource = vis.MeshAtts.Foreground # Foreground, MeshCustom vis.MeshAtts.opaqueColorSource = vis.MeshAtts.Background # Background, OpaqueCustom vis.MeshAtts.opaqueMode = vis.MeshAtts.Auto # Auto, On, Off vis.MeshAtts.pointSize = 0.05 vis.MeshAtts.opaqueColor = (255, 255, 255, 255) vis.MeshAtts.smoothingLevel = vis.MeshAtts.None # None, Fast, High vis.MeshAtts.pointSizeVarEnabled = 0 vis.MeshAtts.pointSizeVar = "default" vis.MeshAtts.pointType = vis.MeshAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.MeshAtts.showInternal = 0 vis.MeshAtts.pointSizePixels = 10 vis.MeshAtts.opacity = 1 vis.SetPlotOptions(vis.MeshAtts) vis.DrawPlots() # Iterate through frames vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = _outputDir vis.SaveWindowAtts.fileName = _outputFileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = 3000 vis.SaveWindowAtts.height = 3000 vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.DeleteActivePlots() vis.DeleteActivePlots() vis.CloseDatabase(databaseName) vis.CloseDatabase(databaseName2) # Make the movie: #subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName) pyVisitPath = "pyVisit/" #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh") #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName) framerate = "10" subprocess.call([ pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", _outputDir, _outputFileName, framerate ]) # Delete the point vtk file: os.remove(os.getcwd() + "/" + inputFileName2)
def visit_config(geometry_file, data_file, args): """ Convert geometry file to stl, convert data file to vtk, load each file into VisIt, and create and load a session file containing four plot windows. 1) A cube with a slice through an octant. 2) XY plane slice through the centroid. 3) XZ plane slice through the centroid. 4) YZ plane slice through the centroid. Each window has a mesh plot with the "STL_mesh" variable, a Pseudocolor plot with the "TALLY_TAG" variable, and the second, third, and fourth windows have Contour plots with the "ERROR_TAG" variable. If the user has indicated to, launch VisIt and load the session file. Input: ______ geometry_file: h5m file User supplied geometry file. data_file: h5m or vtk file User supplied data file. args: Namespace User supplied geometry file location, data file location, and indication if the user wants images of the plot windows with a timestamp and the session file saved and opened in VisIt. Returns: ________ None """ # Create a list of dictionaries indicating the data, plot, and variable in VisIt. Files = [{ "file_name": data_file, "plot_type": "Pseudocolor", "data_tag": "TALLY_TAG" }, { "file_name": data_file, "plot_type": "Contour", "data_tag": "ERROR_TAG" }, { "file_name": geometry_file, "plot_type": "Mesh", "data_tag": "STL_mesh" }] # Launch VisIt and add appropriate plots. Vi.LaunchNowin() for file in Files: Vi.OpenDatabase(file["file_name"]) Vi.AddPlot(file["plot_type"], file["data_tag"]) # Hide the contour plot in the first plot window. Vi.SetActivePlots(1) Vi.HideActivePlots() # Create the plot of the cube by activating the mesh and pseudocolor plots. Vi.SetActivePlots((0, 2)) # Set the view normal to the first octant. v = Vi.GetView3D() v.viewNormal = (1, 1, 1) Vi.SetView3D(v) # Apply a clip through the first octant. Vi.AddOperator("Clip") c = Vi.ClipAttributes() c.plane1Origin = (40, 40, 40) c.plane1Normal = (1, 1, 1) Vi.SetOperatorOptions(c) # Include the CNERG logo in the bottom left corner of the plot. image = Vi.CreateAnnotationObject("Image") image.image = os.path.dirname(os.path.abspath(__file__)) + "/cnerg.jpg" image.position = (0.02, 0.02) image.width = 10 image.height = 10 Vi.DrawPlots() if args.images: if args.timestamp: attributes = Vi.GetAnnotationAttributes() attributes.userInfoFlag = 0 Vi.SetAnnotationAttributes(attributes) Vi.SaveWindow() # Create the second plot of the XY plane slice. plane_slice_plotting(2, 2, "XY Plane", args.images, args.timestamp) # Create the third plot of the XZ plane slice. plane_slice_plotting(3, 1, "XZ Plane", args.images, args.timestamp) # Create the fourth plot of the YZ plane slice. plane_slice_plotting(4, 0, "ZY Plane", args.images, args.timestamp) # Display the four windows in a 2x2 grid. Vi.SetWindowLayout(4) # Save the session file with the default VisIt output to the current directory. visit_output = "VisitDefaultOutput.session" Vi.SaveSession(visit_output) Vi.Close() # Retrieve the path to the VisIt session file. session_file_path = os.path.join(os.getcwd(), visit_output) # If the user has indicated to, open the session file with the VisIt GUI. if args.openvisit: os.system("visit -sessionfile {} &".format(session_file_path)) # If the user has indicated to, remove the session file after VisIt has opened. if not args.sessionfile: os.system("sleep 10; rm {}".format(session_file_path))
def make_moving_frame_of_reference_movie(x_begin, x_end, y_begin, y_end, speed_x, speed_y, variable_name, minThreshold, maxThreshold, input_directory, input_file_name, output_directory, output_file_name, color_table="hot_desaturated", start_frame=-1, end_frame=-1, frame_skip_dt=1.0): ''' Function for making a movie with a moving frame of reference. :param x_begin The starting frame's beginning x-coordinate :param x_end The starting frame's ending x-coordinate :param y_begin The starting frame's beginning x-coordinate :param y_end The starting frame's ending y-coordinate :param speed_x The speed at which the frame moves in the x direction :param speed_y The speed at which the frame moves in the y direction :param variable_name Name of the variable (For ex \"rho\") :param minThreshold Minimum threshold for the variable :param maxThreshold Maximum threshold for the variable :param input_directory The path to the directory where the files are :param input_file_name Name of the files (For ex \"bulk.*.silo\") :param output_directory Directory where to output the movie :param output_file_name Name of the outputted file (For ex \"RHOMOVIE\") :param color_table Name of the color table (\"hot_desaturated\" by default) :param start_frame Starting frame for the movie (if -1, equals 0, -1 by default) :param end_frame Ending frame for the movie (if -1, equals the last frame, -1 by default) :param frame_skip_dt The number of seconds one skip in frame equals (1.0 by default) (Note: This may change depending on the run and should always be checked) ''' # OPTIONS ################################################################# # Input the boundary box for starting coordinates (Starting values) startX = x_begin # The left x-boundary of the box endX = x_end # The right x-boundary of the box startY = y_begin # The bottom y-boundary of the box endY = y_end # The upper y-boundary of the box # Input frame properties startFrame = start_frame # Note: if startFrame is set to -1 the start frame gets set to 0 endFrame = end_frame # Note: if endFrame is set to -1 the endFrame is automatically the number of frames in the database frameInSeconds = frame_skip_dt # Set how many seconds one frame skip is # Input speed in x and y direction speedX = speed_x # Meters per second speedY = speed_y # Meters per second # Input variable variableName = variable_name minVariableValue = minThreshold maxVariableValue = maxThreshold colorTableName = color_table # Input directory and file names outputDir = output_directory # Set the output directory (Where .png s are saved) outputFileName = output_file_name # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, . databaseName = "localhost:" + input_directory + input_file_name + " database" # For navigating to the silo files # visitBinDirectory = "/usr/local/visit/bin" #Nevermind this # Note: a slice of the plot in z-axis is taken automatically ################################################################# # Launch visit visitBinDirectory = '/home/htest/visit/bin' vis.LaunchNowin(vdir=visitBinDirectory) dx = speedX * frameInSeconds # Note: This is in meters per frame! dy = speedY * frameInSeconds # Note: This is in meters per frame! #Set up window and annotations vis.OpenDatabase(databaseName, 0) #Load settings visSettings.load_visit_settings() vis.AddPlot("Pseudocolor", variableName, 1, 1) vis.SetActivePlots(0) vis.PseudocolorAtts = vis.PseudocolorAttributes() vis.PseudocolorAtts.legendFlag = 1 vis.PseudocolorAtts.lightingFlag = 1 vis.PseudocolorAtts.minFlag = 1 vis.PseudocolorAtts.maxFlag = 1 vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot vis.PseudocolorAtts.min = minVariableValue vis.PseudocolorAtts.max = maxVariableValue vis.PseudocolorAtts.pointSize = 0.05 vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.PseudocolorAtts.skewFactor = 1 vis.PseudocolorAtts.opacity = 1 vis.PseudocolorAtts.colorTableName = color_table vis.PseudocolorAtts.invertColorTable = 0 vis.PseudocolorAtts.smoothingLevel = 0 vis.PseudocolorAtts.pointSizeVarEnabled = 0 vis.PseudocolorAtts.pointSizeVar = "default" vis.PseudocolorAtts.pointSizePixels = 2 vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.PseudocolorAtts.lineWidth = 0 vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable vis.SetPlotOptions(vis.PseudocolorAtts) vis.SetActivePlots(0) vis.AddOperator("Slice", 1) vis.AddOperator("Threshold", 1) vis.ThresholdAtts = vis.ThresholdAttributes() vis.ThresholdAtts.outputMeshType = 0 vis.ThresholdAtts.listedVarNames = ("Boundary_type") vis.ThresholdAtts.zonePortions = (1) vis.ThresholdAtts.lowerBounds = (1) vis.ThresholdAtts.upperBounds = (1) vis.ThresholdAtts.defaultVarName = variableName vis.ThresholdAtts.defaultVarIsScalar = 1 vis.SetOperatorOptions(vis.ThresholdAtts, 1) vis.ThresholdAtts = vis.ThresholdAttributes() vis.ThresholdAtts.outputMeshType = 0 vis.ThresholdAtts.listedVarNames = ("Boundary_type") vis.ThresholdAtts.zonePortions = (1) vis.ThresholdAtts.lowerBounds = (1) vis.ThresholdAtts.upperBounds = (1) vis.ThresholdAtts.defaultVarName = variableName vis.ThresholdAtts.defaultVarIsScalar = 1 vis.SetOperatorOptions(vis.ThresholdAtts, 1) vis.SetActivePlots(0) vis.SliceAtts = vis.SliceAttributes() vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node vis.SliceAtts.originPoint = (0, 0, 0) vis.SliceAtts.originIntercept = 0 vis.SliceAtts.originPercent = 0 vis.SliceAtts.originZone = 0 vis.SliceAtts.originNode = 0 vis.SliceAtts.normal = (0, 0, 1) vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi vis.SliceAtts.upAxis = (0, 1, 0) vis.SliceAtts.project2d = 1 vis.SliceAtts.interactive = 1 vis.SliceAtts.flip = 0 vis.SliceAtts.originZoneDomain = 0 vis.SliceAtts.originNodeDomain = 0 vis.SliceAtts.meshName = "SpatialGrid" vis.SliceAtts.theta = 0 vis.SliceAtts.phi = 90 vis.SetOperatorOptions(vis.SliceAtts, 1) vis.DrawPlots() if endFrame == -1: endFrame = vis.TimeSliderGetNStates() - 1 if startFrame == -1: startFrame = 0 # Iterate through frames for i in xrange(startFrame, endFrame + 1): vis.SetTimeSliderState(i) frame = i - startFrame vis.View2DAtts = vis.View2DAttributes() vis.View2DAtts.windowCoords = (startX + frame * dx, endX + frame * dx, startY + frame * dy, endY + frame * dy) vis.View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95) vis.View2DAtts.fullFrameActivationMode = vis.View2DAtts.Auto # On, Off, Auto vis.View2DAtts.fullFrameAutoThreshold = 100 vis.View2DAtts.xScale = vis.View2DAtts.LINEAR # LINEAR, LOG vis.View2DAtts.yScale = vis.View2DAtts.LINEAR # LINEAR, LOG vis.View2DAtts.windowValid = 1 vis.SetView2D(vis.View2DAtts) vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = outputDir vis.SaveWindowAtts.fileName = outputFileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = 1024 vis.SaveWindowAtts.height = 1024 vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.DeleteActivePlots() vis.CloseDatabase(databaseName) # Make the movie: framerate = 7 subprocess.call([ pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", outputDir, outputFileName, framerate ])
"file_name": data_file, "plot_type": "Pseudocolor", "data_tag": "TALLY_TAG" }, { "file_name": data_file, "plot_type": "Contour", "data_tag": "ERROR_TAG" }] Vi.LaunchNowin() for file in Files: Vi.OpenDatabase(file["file_name"]) Vi.AddPlot(file["plot_type"], file["data_tag"]) # Hide the contour plot in the first plot window. Vi.SetActivePlots(2) Vi.HideActivePlots() # Create the plot of the cube by activating the mesh and pseudocolor plots. Vi.SetActivePlots((0, 1)) # Set the view normal to the first octant. v = Vi.GetView3D() v.viewNormal = (1, 1, 1) Vi.SetView3D(v) # Apply a clip through the first octant. Vi.AddOperator("Clip") c = Vi.ClipAttributes() c.plane1Origin = (40, 40, 40) c.plane1Normal = (1, 1, 1)
def make_movie( variableName, minValue, maxValue, inputDirectory, inputFileName, outputDirectory, outputFileName, colorTable="hot_desaturated", startFrame=-1, endFrame=-1 ): ''' Function for making a movie Arguments: :param variableName Name of the variable :param minValue Minimum value of the variable :param maxValue Maximum value of the variable :param inputDirectory Path to input vlsv/silo files :param inputFileName Name of the file(s) so for example if the filenames are bulk.0000.silo, bulk.0001.silo, .. then inputFileName=\"bulk.*.silo\"" :param outputDirectory Path to output directory :param outputFileName Name of the output file :param colorTable="hot_desaturated" Color table for the plots :param startFrame=-1 Starting frame of the movie (-1 equals 0) :param endFrame=-1 Starting frame of the movie (-1 equals last frame) ''' # OPTIONS ################################################################# # Input frame properties _startFrame = startFrame # Note: if _startFrame is set to -1 the start frame gets set to 0 _endFrame = endFrame # Note: if _endFrame is set to -1 the _endFrame is automatically the number of frames in the database # Input variable _variableName = variableName minVariableValue = minValue maxVariableValue = maxValue colorTableName = colorTable # Input directory and file names #_outputDir = "/home/hannukse/MOVINGFRAME_MOVIES/AAJ_BZ_REMAKE/" # Set the output directory (Where .png s are saved) _outputDir = outputDirectory #_outputFileName = "BZ_FORESHOCK_2_" # The file names for the png files. These for ex. will be saved visit0000.png, visit0001.png, .. _outputFileName = outputFileName # The file names for the png files. #databaseName = "localhost:/home/hannukse/meteo/stornext/field/vlasiator/2D/AAJ/silo_files/bulk.*.silo database" # For navigating to the silo files databaseName = "localhost:" + inputDirectory + inputFileName + " database" # For navigating to the silo files # Note: a slice of the plot in z-axis is taken automatically ################################################################# # LaunchNowin(vdir=visitBinDirectory) #dx = speedX * frameInSeconds # Note: This is in meters per frame! #dy = speedY * frameInSeconds # Note: This is in meters per frame! #LaunchNowin(vdir="/usr/local/visit/bin") #Set up window and annotations #vis.LaunchNowin(vdir="/usr/local/visit/bin") vis.OpenDatabase(databaseName, 0) #Load settings visSettings.load_visit_settings() vis.AddPlot("Pseudocolor", _variableName, 1, 1) #CONTINUE vis.SetActivePlots(0) vis.PseudocolorAtts = vis.PseudocolorAttributes() vis.PseudocolorAtts.legendFlag = 1 vis.PseudocolorAtts.lightingFlag = 1 vis.PseudocolorAtts.minFlag = 1 vis.PseudocolorAtts.maxFlag = 1 vis.PseudocolorAtts.centering = vis.PseudocolorAtts.Natural # Natural, Nodal, Zonal vis.PseudocolorAtts.scaling = vis.PseudocolorAtts.Linear # Linear, Log, Skew vis.PseudocolorAtts.limitsMode = vis.PseudocolorAtts.CurrentPlot # OriginalData, CurrentPlot vis.PseudocolorAtts.min = minVariableValue vis.PseudocolorAtts.max = maxVariableValue vis.PseudocolorAtts.pointSize = 0.05 vis.PseudocolorAtts.pointType = vis.PseudocolorAtts.Point # Box, Axis, Icosahedron, Point, Sphere vis.PseudocolorAtts.skewFactor = 1 vis.PseudocolorAtts.opacity = 1 vis.PseudocolorAtts.colorTableName = colorTableName vis.PseudocolorAtts.invertColorTable = 0 vis.PseudocolorAtts.smoothingLevel = 0 vis.PseudocolorAtts.pointSizeVarEnabled = 0 vis.PseudocolorAtts.pointSizeVar = "default" vis.PseudocolorAtts.pointSizePixels = 2 vis.PseudocolorAtts.lineStyle = vis.PseudocolorAtts.SOLID # SOLID, DASH, DOT, DOTDASH vis.PseudocolorAtts.lineWidth = 0 vis.PseudocolorAtts.opacityType = vis.PseudocolorAtts.Explicit # Explicit, ColorTable vis.SetPlotOptions(vis.PseudocolorAtts) vis.SetActivePlots(0) vis.AddOperator("Slice", 1) vis.SetActivePlots(0) vis.SliceAtts = vis.SliceAttributes() vis.SliceAtts.originType = vis.SliceAtts.Intercept # Point, Intercept, Percent, Zone, Node vis.SliceAtts.originPoint = (0, 0, 0) vis.SliceAtts.originIntercept = 0 vis.SliceAtts.originPercent = 0 vis.SliceAtts.originZone = 0 vis.SliceAtts.originNode = 0 vis.SliceAtts.normal = (0, 0, 1) vis.SliceAtts.axisType = vis.SliceAtts.ZAxis # XAxis, YAxis, ZAxis, Arbitrary, ThetaPhi vis.SliceAtts.upAxis = (0, 1, 0) vis.SliceAtts.project2d = 1 vis.SliceAtts.interactive = 1 vis.SliceAtts.flip = 0 vis.SliceAtts.originZoneDomain = 0 vis.SliceAtts.originNodeDomain = 0 vis.SliceAtts.meshName = "SpatialGrid" vis.SliceAtts.theta = 0 vis.SliceAtts.phi = 90 vis.SetOperatorOptions(vis.SliceAtts, 1) vis.DrawPlots() if _endFrame == -1: _endFrame = vis.TimeSliderGetNStates() - 1 if _startFrame == -1: _startFrame = 0 # Iterate through frames for i in range(_startFrame, _endFrame+1): vis.SetTimeSliderState(i) frame = i - _startFrame vis.SaveWindowAtts = vis.SaveWindowAttributes() vis.SaveWindowAtts.outputToCurrentDirectory = 0 vis.SaveWindowAtts.outputDirectory = _outputDir vis.SaveWindowAtts.fileName = _outputFileName vis.SaveWindowAtts.family = 1 vis.SaveWindowAtts.format = vis.SaveWindowAtts.PNG # BMP, CURVE, JPEG, OBJ, PNG, POSTSCRIPT, POVRAY, PPM, RGB, STL, TIFF, ULTRA, VTK, PLY vis.SaveWindowAtts.width = 3000 vis.SaveWindowAtts.height = 3000 vis.SaveWindowAtts.screenCapture = 0 vis.SaveWindowAtts.saveTiled = 0 vis.SaveWindowAtts.quality = 100 vis.SaveWindowAtts.progressive = 0 vis.SaveWindowAtts.binary = 0 vis.SaveWindowAtts.stereo = 0 vis.SaveWindowAtts.compression = vis.SaveWindowAtts.PackBits # None, PackBits, Jpeg, Deflate vis.SaveWindowAtts.forceMerge = 0 vis.SaveWindowAtts.resConstraint = vis.SaveWindowAtts.ScreenProportions # NoConstraint, EqualWidthHeight, ScreenProportions vis.SaveWindowAtts.advancedMultiWindowSave = 0 vis.SetSaveWindowAttributes(vis.SaveWindowAtts) vis.SaveWindow() vis.DeleteActivePlots() vis.CloseDatabase(databaseName) # Make the movie: #subprocess.call("./moviecompilescript.sh " + _outputDir + " " + _outputFileName) pyVisitPath = "pyVisit/" #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh") #subprocess.call(pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh " + _outputDir + " " + _outputFileName) framerate = "10" subprocess.call([pythonLibDirectoryPath + pyVisitPath + "moviecompilescript.sh", _outputDir, _outputFileName, framerate])
def createPseudocolor(self, varname, display_name=None, cmap=None, limits=None, linewidth=None, legend=True, alpha=False): """Generic creation of pseudocolor""" if display_name is None: display_name = vrc.renameScalar(varname) if "temperature" in display_name: display_name = display_name.replace("[K]", "[C]") print "defining alias: %s = %s" % (display_name, varname) v.DefineScalarExpression(display_name, "<%s> - 273.15" % varname) elif display_name != varname: print "defining alias: %s = %s" % (display_name, varname) v.DefineScalarExpression(display_name, '<' + varname + '>') v.AddPlot('Pseudocolor', display_name) pa = v.PseudocolorAttributes() # limits if limits is None: limits = vrc.getLimits(varname) if limits is not None: min = limits[0] max = limits[1] if min is not None: pa.minFlag = 1 pa.min = min if max is not None: pa.maxFlag = 1 pa.max = max # opacity if alpha: pa.opacity = 0 pa.opacityType = pa.ColorTable # colormap if cmap is not None: reverse = cmap.endswith("_r") if reverse: cmap = cmap.strip("_r") pa.invertColorTable = 1 pa.colorTableName = cmap # linewidth for 2D if linewidth is None: linewidth = vrc.rcParams['pseudocolor.linewidth'] pa.lineWidth = linewidth # turn off legend for 2D surf if not legend: pa.legendFlag = 0 v.SetActivePlots(len(self.plots) + 1) v.SetPlotOptions(pa) pname = v.GetPlotList().GetPlots(v.GetNumPlots() - 1).plotName if legend: plot = Plot(pname, 'Pseudocolor', pa, display_name) else: plot = Plot(pname, 'Pseudocolor', pa) self.plots.append(plot) return plot
"""Script for saving the changed attribute files """ import visit as vi view_attr_file = 'view_attr.xml' annotation_attr_file = 'anno_attr.xml' plasma_attr_file = 'plasma_attr.xml' wave_attr_file = 'wave_attr.xml' vi.SaveAttribute(view_attr_file, vi.GetView3D()) vi.SaveAttribute(annotation_attr_file, vi.GetAnnotationAttributes()) vi.SetActivePlots(0) vi.SaveAttribute(plasma_attr_file, vi.GetPlotOptions()) vi.SetActivePlots(1) vi.SaveAttribute(wave_attr_file, vi.GetPlotOptions())