Python main Examples

Example #1

File: align_1kx5_pdbs.py Project: stvn66/sassie_0_dna

def separate_1kx5():
    '''
    create separate pdb files of all the histones
    '''
    import x_dna.build_mol.chain_get_pdb_and_seq as get_pdb
    in_vars = inputs()
    in_vars.chains = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H']
    in_vars.chains = ['C', 'G']

    in_vars.pdb = 'dimer_ncp1/1KX5tailfold_dimer_ncp1.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = 'dimer_ncp2/1KX5tailfold_dimer_ncp2.pdb'
    get_pdb.main(in_vars)

Example #2

def separate_1kx5():
    '''
    create separate pdb files of all the histones
    '''
    import x_dna.build_mol.chain_get_pdb_and_seq as get_pdb
    in_vars = inputs()
    in_vars.chains = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H']
    in_vars.chains = ['C', 'G']

    in_vars.pdb = 'dimer_ncp1/1KX5tailfold_dimer_ncp1.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = 'dimer_ncp2/1KX5tailfold_dimer_ncp2.pdb'
    get_pdb.main(in_vars)

Example #3

File: align_1kx5_pdbs.py Project: stvn66/sassie_0_dna

def separate_1kx5():
    '''
    create separate pdb files of all the histones
    '''
    in_vars = inputs()
    in_vars.chains = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H']
    # in_vars.chains = ['C', 'G']

    in_vars.pdb = '4mer_ncp1/1KX5_4mer_ncp1.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp2/1KX5_4mer_ncp2.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp3/1KX5_4mer_ncp3.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp4/1KX5_4mer_ncp4.pdb'
    get_pdb.main(in_vars)

Example #4

File: align_1kx5_pdbs.py Project: qiuresearch/sassie_0_dna

def separate_1kx5():
    '''
    create separate pdb files of all the histones
    '''
    in_vars = inputs()
    in_vars.chains = ['A', 'B', 'C', 'D', 'E', 'F', 'G', 'H']
    # in_vars.chains = ['C', 'G']

    in_vars.pdb = '4mer_ncp1/1KX5_4mer_ncp1.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp2/1KX5_4mer_ncp2.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp3/1KX5_4mer_ncp3.pdb'
    get_pdb.main(in_vars)

    in_vars.pdb = '4mer_ncp4/1KX5_4mer_ncp4.pdb'
    get_pdb.main(in_vars)