def loadProjectPCA():
saveFileName = askopenfilename(initialdir = "/",title = "Select file",filetypes = (("Phenotype Files","*"),("all files","*.*")))
saveFileObject = open(saveFileName)
i = 0;
next = saveFileObject.readline()
PCADataRead = next
PCADataRead = PCADataRead.strip()
#reads through the text file and takes out the save data
while i < 5:
if(i == 0):
PCAPhenoRead = saveFileObject.readline()
PCAPhenoRead = PCAPhenoRead.rstrip('\n')
if(i == 1):
columnPCAEvec1read = saveFileObject.readline()
columnPCAEvec1read = columnPCAEvec1read.strip()
if(i == 2):
columnPCAEvec2read = saveFileObject.readline()
columnPCAEvec2read = columnPCAEvec2read.strip()
if(i == 3):
columnPCAEvec3read = saveFileObject.readline()
columnPCAEvec3read = columnPCAEvec3read.strip()
if(i == 4):
columnPCAPhenoRead = saveFileObject.readline()
columnPCAPhenoRead = columnPCAPhenoRead.strip()
i = i + 1
#Creates a new plot when loaded
PCAPlotterLoad = PCA.PCAPlotter()
PCAPlotterLoad.readFile1(PCAPhenoRead)
PCAPlotterLoad.readFile2(PCADataRead)
PCAPlotterLoad.connectFilesAddColour(int(columnPCAEvec1read), int(columnPCAEvec2read), int(columnPCAEvec3read), int(columnPCAPhenoRead))
PCAPlotterLoad.plotGraph()
PCAData = ""
PCAPheno = ""
AdmixData = ""
AdmixFam = ""
AdmixPheno = ""
#----------------------Colour Options------------------------------------------------
#Colors to be used within the plotted graphs
colors = ['#0000FF', '#FF0000', '#008000', '#00FF00', '#FFFF00', '#00FFFF', '#008080', '#C0C0C0', '#FF00FF', '#800080',
'#008000', '#000000']
#---------------------------------------------------------------------
# Instantiating the classes
PCAplotter = PCA.PCAPlotter()
AdmixPlotter = Admix.admixPlotter()
# Takes the file directory chosen and gives it to the PCA object
def importDataFilePCA():
global PCAData
PCAData = askopenfilename(initialdir = "/",title = "Select file",filetypes = (("Data Files",".evec"),("all files","*.*")))
PCAplotter.readFile2(PCAData)
# Takes the file directory chosen and gives it to the PCA object
def importPhenoFilePCA():
global PCAPheno
PCAPheno = askopenfilename(initialdir = "/",title = "Select file",filetypes = (("Phenotype Files","*.phe"),("all files","*.*")))
#plotter.readFile2('comm-SYMCL.pca.evec')
PCAplotter.readFile1(PCAPheno)
