Python SamtoolsCatCommandline Exemples

Exemple #1

Fichier : test_samtools_tool.py Projet : MCalvi/biopython

 def test_cat(self):
     cmdline = SamtoolsCatCommandline(samtools_exe)
     cmdline.set_parameter("o", self.outbamfile)
     cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2])
     stdout, stderr = cmdline()
     self.assertEqual(stderr, "")
     self.assertTrue(os.path.exists(self.outbamfile))
     self.add_files_to_clean(self.outbamfile)

Exemple #2

 def test_cat(self):
     cmdline = SamtoolsCatCommandline(samtools_exe)
     cmdline.set_parameter("o", self.outbamfile)
     cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2])
     stdout, stderr = cmdline()
     self.assertEqual(stderr, "")
     self.assertTrue(os.path.exists(self.outbamfile))
     self.add_files_to_clean(self.outbamfile)

Exemple #3

Fichier : test_samtools_tool.py Projet : kctsai066/hello-world

 def test_cat(self):
     cmdline = SamtoolsCatCommandline(samtools_exe)
     cmdline.set_parameter("o", self.outbamfile)
     cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2])
     stdout, stderr = cmdline()
     self.assertEqual(stderr, "")

Exemple #4

Fichier : test_samtools_tool.py Projet : kevinwuhoo/biopython

 def test_cat(self):
     cmdline = SamtoolsCatCommandline(samtools_exe)
     cmdline.set_parameter("o", self.outbamfile)
     cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2])
     stdout, stderr = cmdline()
     self.assertEqual(stderr, "")