def test_cat(self): cmdline = SamtoolsCatCommandline(samtools_exe) cmdline.set_parameter("o", self.outbamfile) cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2]) stdout, stderr = cmdline() self.assertEqual(stderr, "") self.assertTrue(os.path.exists(self.outbamfile)) self.add_files_to_clean(self.outbamfile)
def test_cat(self): cmdline = SamtoolsCatCommandline(samtools_exe) cmdline.set_parameter("o", self.outbamfile) cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2]) stdout, stderr = cmdline() self.assertEqual(stderr, "") self.assertTrue(os.path.exists(self.outbamfile)) self.add_files_to_clean(self.outbamfile)
def test_cat(self): cmdline = SamtoolsCatCommandline(samtools_exe) cmdline.set_parameter("o", self.outbamfile) cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2]) stdout, stderr = cmdline() self.assertEqual(stderr, "")
def test_cat(self): cmdline = SamtoolsCatCommandline(samtools_exe) cmdline.set_parameter("o", self.outbamfile) cmdline.set_parameter("input_bam", [self.bamfile1, self.bamfile2]) stdout, stderr = cmdline() self.assertEqual(stderr, "")