def single_grp_avg(group_participants, z_thresh, p_thresh, model_name, output_dir=None): from CPAC.utils import create_fsl_flame_preset if not output_dir: import os output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis') create_fsl_flame_preset.run(group_participants, 'all', z_thresh, p_thresh, 'single_grp', output_dir=output_dir, model_name=model_name)
def tripled_two(group_participants, z_thresh, p_thresh, conditions, condition_type, model_name, output_dir=None): from CPAC.utils import create_fsl_flame_preset if not output_dir: import os output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis') create_fsl_flame_preset.run(group_participants, 'all', z_thresh, p_thresh, 'tripled_two', covariate=conditions, condition_type=condition_type, output_dir=output_dir, model_name=model_name)
def unpaired_two(group_participants, z_thresh, p_thresh, pheno_file, pheno_sub, covariate, model_name, output_dir=None): from CPAC.utils import create_fsl_flame_preset if not output_dir: import os output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis') create_fsl_flame_preset.run(group_participants, 'all', z_thresh, p_thresh, 'unpaired_two', pheno_file=pheno_file, pheno_sub_label=pheno_sub, covariate=covariate, output_dir=output_dir, model_name=model_name)
def single_grp_cov(pipeline_dir, z_thresh, p_thresh, pheno_file, pheno_sub, covariate, model_name, output_dir=None, group_participants=None): from CPAC.utils import create_fsl_flame_preset if not output_dir: output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis') create_fsl_flame_preset.run(pipeline_dir, 'all', z_thresh, p_thresh, 'single_grp_cov', group_participants, pheno_file=pheno_file, pheno_sub_label=pheno_sub, covariate=covariate, output_dir=output_dir, model_name=model_name)