def single_grp_avg(group_participants,
z_thresh,
p_thresh,
model_name,
output_dir=None):
from CPAC.utils import create_fsl_flame_preset
if not output_dir:
import os
output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis')
create_fsl_flame_preset.run(group_participants,
'all',
z_thresh,
p_thresh,
'single_grp',
output_dir=output_dir,
model_name=model_name)
def tripled_two(group_participants,
z_thresh,
p_thresh,
conditions,
condition_type,
model_name,
output_dir=None):
from CPAC.utils import create_fsl_flame_preset
if not output_dir:
import os
output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis')
create_fsl_flame_preset.run(group_participants,
'all',
z_thresh,
p_thresh,
'tripled_two',
covariate=conditions,
condition_type=condition_type,
output_dir=output_dir,
model_name=model_name)
def unpaired_two(group_participants,
z_thresh,
p_thresh,
pheno_file,
pheno_sub,
covariate,
model_name,
output_dir=None):
from CPAC.utils import create_fsl_flame_preset
if not output_dir:
import os
output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis')
create_fsl_flame_preset.run(group_participants,
'all',
z_thresh,
p_thresh,
'unpaired_two',
pheno_file=pheno_file,
pheno_sub_label=pheno_sub,
covariate=covariate,
output_dir=output_dir,
model_name=model_name)
def single_grp_cov(pipeline_dir,
z_thresh,
p_thresh,
pheno_file,
pheno_sub,
covariate,
model_name,
output_dir=None,
group_participants=None):
from CPAC.utils import create_fsl_flame_preset
if not output_dir:
output_dir = os.path.join(os.getcwd(), 'cpac_group_analysis')
create_fsl_flame_preset.run(pipeline_dir,
'all',
z_thresh,
p_thresh,
'single_grp_cov',
group_participants,
pheno_file=pheno_file,
pheno_sub_label=pheno_sub,
covariate=covariate,
output_dir=output_dir,
model_name=model_name)
