#Train VAE DTCRU.Train_VAE(accuracy_min=0.9, Load_Prev_Data=True) #Create Repertoire Dendrogram color_dict = { 'Control': 'limegreen', '9H10': 'red', 'RT': 'darkorange', 'Combo': 'magenta' } DTCRU.Repertoire_Dendrogram(n_jobs=40, distance_metric='KL', log_scale=True, dendrogram_radius=0.28, repertoire_radius=0.35, Load_Prev_Data=True, gridsize=60, color_dict=color_dict, lw=4, gaussian_sigma=1.0, vmax=0.001) import matplotlib.pyplot as plt plt.figure() plt.scatter(0, 0, s=5000, edgecolors='magenta', facecolors='none', linewidths=8)
from DeepTCR.DeepTCR import DeepTCR_U # Instantiate training object DTCRU = DeepTCR_U('Rep_Dendrogram',device='/gpu:2') #Load Data from directories DTCRU.Get_Data(directory='../../Data/Rudqvist',Load_Prev_Data=False,aggregate_by_aa=True, aa_column_beta=1,count_column=2,v_beta_column=7,d_beta_column=14,j_beta_column=21) #Train VAE DTCRU.Train_VAE(accuracy_min=0.9) color_dict = {'Control':'limegreen','9H10':'red','RT':'darkorange','Combo':'magenta'} DTCRU.Repertoire_Dendrogram(n_jobs=40,distance_metric='KL', dendrogram_radius=0.28,repertoire_radius=0.35,Load_Prev_Data=True,gridsize=6, color_dict=color_dict)