if SliceLabel: # sometimes the slicelabel is none Title = SliceLabel.split( '\n', 1)[0] # split otherwise we get some unecessary information else: Title = image.getTitle() else: Title = image.getTitle() searchedImage.setTitle(Title) # Do the template(s) matching #Start = time.clock() Hits_BeforeNMS = getHit_Template( template, searchedImage, flipv, fliph, angles, Method, n_hit, score_threshold, tolerance ) # template and image as ImagePlus (to get the name together with the image matrix) #Stop = time.clock() #IJ.log("getHit_Template took " + str(Stop-Start) + " seconds") ### NMS ### #IJ.log(str(len(Hits_BeforeNMS)) + " hit before NMS") #print "\n-- Hits before NMS --\n", #for hit in Hits_BeforeNMS : print hit # NMS if more than one hit before NMS. For n_hit=1 the NMS does not actually compute the IoU it will just take the best score #start_NMS = time.clock() if len(Hits_BeforeNMS) == 1: Hits_AfterNMS = Hits_BeforeNMS
IJ.log( "The template " + ImpTemplate.getTitle() + " is larger in width and/or height than the search region -> skipped" ) continue # go directly to the next for iteration elif ImpTemplate.width > ImpImage.width or ImpTemplate.height > ImpImage.height: IJ.log( "The template " + ImpTemplate.getTitle() + " is larger in width and/or height than the searched image-> skipped" ) continue # go directly to the next for iteration # Get hits for the current template (and his flipped and/or rotated versions) List_Hit = getHit_Template( ImpTemplate, ImpImage, flipv, fliph, angles, Method, n_hit, score_threshold, tolerance ) # raher use ImagePlus as input to get the name of the template used # Store the hits Hits_BeforeNMS.extend(List_Hit) ### NMS ### #print "\n-- Hits before NMS --\n", #for hit in Hits_BeforeNMS: print hit # InterHit NMS if more than one hit if Method in [0, 1]: Hits_AfterNMS = NMS( Hits_BeforeNMS, N=n_hit, maxOverlap=max_overlap,