if SliceLabel: # sometimes the slicelabel is none
Title = SliceLabel.split(
'\n',
1)[0] # split otherwise we get some unecessary information
else:
Title = image.getTitle()
else:
Title = image.getTitle()
searchedImage.setTitle(Title)
# Do the template(s) matching
#Start = time.clock()
Hits_BeforeNMS = getHit_Template(
template, searchedImage, flipv, fliph, angles, Method, n_hit,
score_threshold, tolerance
) # template and image as ImagePlus (to get the name together with the image matrix)
#Stop = time.clock()
#IJ.log("getHit_Template took " + str(Stop-Start) + " seconds")
### NMS ###
#IJ.log(str(len(Hits_BeforeNMS)) + " hit before NMS")
#print "\n-- Hits before NMS --\n",
#for hit in Hits_BeforeNMS : print hit
# NMS if more than one hit before NMS. For n_hit=1 the NMS does not actually compute the IoU it will just take the best score
#start_NMS = time.clock()
if len(Hits_BeforeNMS) == 1:
Hits_AfterNMS = Hits_BeforeNMS
IJ.log(
"The template " + ImpTemplate.getTitle() +
" is larger in width and/or height than the search region -> skipped"
)
continue # go directly to the next for iteration
elif ImpTemplate.width > ImpImage.width or ImpTemplate.height > ImpImage.height:
IJ.log(
"The template " + ImpTemplate.getTitle() +
" is larger in width and/or height than the searched image-> skipped"
)
continue # go directly to the next for iteration
# Get hits for the current template (and his flipped and/or rotated versions)
List_Hit = getHit_Template(
ImpTemplate, ImpImage, flipv, fliph, angles, Method, n_hit,
score_threshold, tolerance
) # raher use ImagePlus as input to get the name of the template used
# Store the hits
Hits_BeforeNMS.extend(List_Hit)
### NMS ###
#print "\n-- Hits before NMS --\n",
#for hit in Hits_BeforeNMS: print hit
# InterHit NMS if more than one hit
if Method in [0, 1]:
Hits_AfterNMS = NMS(
Hits_BeforeNMS,
N=n_hit,
maxOverlap=max_overlap,
