def test_p3(self):
print 'get a community name from the mapper classes'
mapper = site_mappers.get_current_mapper()
community = mapper.map_area
print 'No. of SURVEY = ' + str(Survey.objects.all().count())
plot = PlotFactory(community=community, household_count=1, status='residential_habitable')
print 'No. of HOUSEHOLDS = ' + str(Household.objects.all().count())
Household.objects.get(plot=plot)
self.assertEquals(HouseholdStructure.objects.all().count(), 3)
self.assertEquals(Survey.objects.all().count(), 3)
household_structure = HouseholdStructure.objects.get(survey=Survey.objects.all()[0])
RepresentativeEligibilityFactory(household_structure=household_structure)
household_member = HouseholdMemberFactory(household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(household_member=household_member, initials=household_member.initials, has_identity='Yes', dob=date(1989, 01, 01))
study_site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(study_site=study_site, household_member=household_member, registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob, initials=enrollment_checklist.initials)
print subject_consent.subject_identifier
print 'get registered subject'
registered_subject = RegisteredSubject.objects.get(subject_identifier=subject_consent.subject_identifier)
instances = []
instances.append(subject_consent)
instances.append(registered_subject)
print 'test natural key / get_by_natural_key on subject_visit'
print 'No. of ENTRIES = ' + str(Entry.objects.all().count())
# content_type = ContentType.objects.get(app_label='bcpp_subject', model='subjectvisit')
# content_type_map = ContentTypeMap.objects.get(content_type=content_type)
self.assertEqual(VisitDefinition.objects.all().count(), 2)
visit_definition = VisitDefinition.objects.get(code='T0')
print 'No. of Appointments = ' + str(Appointment.objects.all().count())
appointment = Appointment.objects.get(visit_definition=visit_definition)
# print 'No. of ScheduledEntryMetaData before Visit = '+str(ScheduledEntryMetaData.objects.all().count())
subject_visit = SubjectVisitFactory(appointment=appointment, household_member=household_member)
signals.post_save.disconnect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
aliquot_type = AliquotType.objects.all()[0]
site = StudySite.objects.all()[0]
microtube_panel = Panel.objects.get(name='Microtube')
requisition1 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=microtube_panel, aliquot_type=aliquot_type, site=site)
# print requisition1.aliquot_type.numeric_code
elisa_panel = Panel.objects.get(name='ELISA')
requisition2 = SubjectRequisitionFactory(subject_visit=subject_visit, panel=elisa_panel, aliquot_type=aliquot_type, site=site)
signals.post_save.connect(entry_meta_data_on_post_save, weak=False, dispatch_uid="entry_meta_data_on_post_save")
subject_locator = SubjectLocatorFactory(subject_visit=subject_visit, registered_subject=registered_subject)
year_1_survey = Survey.objects.get(survey_slug='bcpp-year-1')
call_list = CallListFactory(household_member=household_member, label='call_label_1')
call_log = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_1')
call_log2 = CallLogFactory(household_member=household_member, survey=year_1_survey, label='call_label_2')
call_log_entry = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now())
call_log_entry2 = CallLogEntryFactory(call_log=call_log, survey=year_1_survey, call_datetime=datetime.now() + timedelta(minutes=3))
instances.append(subject_locator)
instances.append(requisition1)
instances.append(requisition2)
instances.append(call_log)
instances.append(call_log2)
instances.append(call_log_entry)
instances.append(call_log_entry2)
instances.append(call_list)
print 'INSTANCE: ' + str(instances)
for obj in instances:
print 'test natural key on {0}'.format(obj._meta.object_name)
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
# pp = pprint.PrettyPrinter(indent=4)
for obj in instances:
print 'test serializing/deserializing {0}'.format(obj._meta.object_name)
outgoing_transaction = SerializeToTransaction().serialize(obj.__class__, obj, False, True, 'default')
# pp.pprint(FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx))
for transaction in serializers.deserialize("json", FieldCryptor('aes', 'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
def test_p1(self):
self.assertTrue(Household.objects.all().count() == 0)
self.assertTrue(HouseholdStructure.objects.all().count() == 0)
self.assertTrue(HouseholdMember.objects.all().count() == 0)
site_lab_tracker.autodiscover()
study_specific = StudySpecificFactory()
StudySiteFactory()
content_type_map_helper = ContentTypeMapHelper()
content_type_map_helper.populate()
content_type_map_helper.sync()
ContentTypeMap.objects.get(
model__iexact=SubjectConsent._meta.object_name)
setup_dashboard(
self) # creates 3 surveys a plot and two HH which -> 6 HHS
print 'initialize the HH dashboard which will create HHS'
print 'assert no survey for today\'s date'
self.survey1.datetime_end = datetime.today() + relativedelta(days=-5)
self.survey1.save()
self.assertRaises(TypeError, HouseholdDashboard, self.dashboard_type,
self.dashboard_id, self.dashboard_model)
self.assertEquals(HouseholdStructure.objects.all().count(), 6)
print 'update survey1 to include today'
self.survey1.datetime_end = datetime.today() + relativedelta(days=+5)
self.survey1.save()
print 'try again, initialize the HH dashboard which will create HHS'
self.household_dashboard = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model)
print 'assert household structure exists for this HH and the three surveys'
self.assertEquals(
HouseholdStructure.objects.filter(
household=self.household1).count(), 3)
self.household_structure = self.household_dashboard.get_household_structure(
)
print 'create another new HH in community {0}.'.format(self.community)
self.assertEquals(
HouseholdStructure.objects.filter(
household=self.household2).count(), 3)
print 'assert no additional hh structure created'
self.assertEquals(HouseholdStructure.objects.all().count(),
6) # 2 surveys for each HH = 2 x 3 = 6
print 'create HH members for this survey and HH {0}'.format(
self.household1)
self.household_member1 = HouseholdMemberFactory(
household_structure=self.household_structure)
print 'household_member1.registered_subject.pk = {0}'.format(
self.household_member1.registered_subject.pk)
print 'household_member1.survey = {0}'.format(
self.household_member1.survey)
self.household_member2 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member2.registered_subject.pk
self.household_member3 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member3.registered_subject.pk
self.household_member4 = HouseholdMemberFactory(
household_structure=self.household_structure)
print self.household_member4.registered_subject.pk
# this consent has a fk to registered subject
# confirm that the signals do not create more than one registered
# subject or anything like that. consent.rs must equal household_member.rs, etc
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count())
print 'assert HM1.registered_subject.subject_identifier is a pk (not consented yet)'
self.assertRegexpMatches(
HouseholdMember.objects.get(pk=self.household_member1.pk).
registered_subject.subject_identifier, self.re_pk)
print 'consent household_member1'
consent1 = SubjectConsentFactory(
household_member=self.household_member1)
self.assertEqual(Survey.objects.all().count(), 3)
print consent1.subject_identifier
print HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.subject_identifier
print 'assert consent1 household member is household_member1'
print self.assertEqual(consent1.household_member.pk,
self.household_member1.pk)
print 'assert still one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count())
print 'assert subject identifier on consent1 == subject identifier in registered_subject'
self.assertEqual(
consent1.subject_identifier,
RegisteredSubject.objects.get(
subject_identifier=consent1.subject_identifier).
subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.pk)
print 'assert consent1 registered subject subject identifier = household_member1 registered subject subject_identifier'
self.assertEqual(
consent1.registered_subject.subject_identifier,
HouseholdMember.objects.get(pk=self.household_member1.pk).
registered_subject.subject_identifier)
print 'assert cannot create a second consent for consented household_member1 {0}'.format(
self.household_member1.survey)
self.assertRaises(IdentifierError,
SubjectConsentFactory,
household_member=self.household_member1)
# repeat for year 2, make a household_structure, members and consent, etc.
# verify FK constraints do not prevent member, consent data
# verify that subsequent surveys refer to the same registered subject
# that being the one created from the first year
print 'repeat for YEAR 2 for household1'
print 'assert still have only 3 surveys'
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert have 4 HHMs for household1 (from survey1'
self.assertEqual(HouseholdMember.objects.all().count(), 4)
print 'get a household dashboard for survey2 using HH2'
self.dashboard_type = 'household'
self.dashboard_model = 'household'
self.dashboard_id = self.household1.pk
print 'instantiate hHH dashboard with household'
household_dashboard_survey2 = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model,
survey=self.survey2)
print household_dashboard_survey2
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert defaults to survey1, HHS for survey1'
self.assertEqual(household_dashboard_survey2.get_survey(),
self.survey1)
self.assertEqual(
household_dashboard_survey2.get_household_structure().survey,
self.survey1)
print 'get a household dashboard for survey2 using HH2'
self.household_structure2 = HouseholdStructure.objects.get(
household=self.household1, survey=self.survey2)
self.dashboard_type = 'household'
self.dashboard_model = 'household_structure'
self.dashboard_id = self.household_structure2.pk
household_dashboard_survey2 = HouseholdDashboard(self.dashboard_type,
self.dashboard_id,
self.dashboard_model,
survey=self.survey2)
household_dashboard_survey2
print 'confirm uses HHS2 and survey2'
self.assertEqual(household_dashboard_survey2.get_survey(),
self.survey2)
self.assertEqual(
household_dashboard_survey2.get_household_structure().survey,
self.survey2)
household_structure = household_dashboard_survey2.get_household_structure(
)
self.assertEqual(Survey.objects.all().count(), 3)
print 'assert household dashboard returns correct household structure if given survey2'
self.assertEqual(household_structure.survey.pk, self.survey2.pk)
print 'assert household dashboard returns correct household structure if given HH1'
self.assertEqual(household_structure.household.pk, self.household1.pk)
print 'household_structure={0}, plot={1}'.format(
household_structure, household_structure.plot)
print 'assert have 4 HHMs imported from first survey after instantiating dashboard'
household_dashboard_survey2.get_context()
self.assertEqual(
HouseholdMember.objects.filter(
household_structure=household_structure).count(), 4)
print 'assert cannot create a household_member for this survey for known household members (because the dashboard created them)'
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member1.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member2.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member3.registered_subject)
self.assertRaises(
IntegrityError,
HouseholdMemberFactory,
household_structure=household_structure,
survey=self.survey2,
registered_subject=self.household_member4.registered_subject)
# in BCPP, subject consent has a key to registered subject as does
# household member. ensure both are pointing to the same registered_subject
# not only for this survey but always. a household_member is created anew
# for each survey but still refers to a common registered subject. the same
# for the consent, a new consent for each survey but pointing to the same
# registered_subject. household_member uses the registered_subject internal
# identifier field to figure out which registered subject to use when
# setting the attribute for subsequent surveys.
print 'get a list of household members for the survey2 household dashboard'
household_members = household_dashboard_survey2.get_household_members_as_list(
)
household_member1 = household_members[0]
print 'assert 8 household members'
self.assertEqual(HouseholdMember.objects.all().count(), 8)
print '... 4 for survey 1 and 4 for survey 2'
self.assertEqual(
HouseholdMember.objects.filter(survey=self.survey1).count(), 4)
self.assertEqual(
HouseholdMember.objects.filter(survey=self.survey2).count(), 4)
print 'assert still 4 registered subjects'
self.assertEqual(RegisteredSubject.objects.all().count(), 4)
print 'assert one RS per 2 HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count() * 2)
print 'assert HM1.registered_subject.subject_identifier is a subject identifier (was consented in previous survey)'
print HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier
print HouseholdMember.objects.get(
pk=household_member1.pk
).registered_subject.subject_identifier_as_pk
self.assertTrue(
HouseholdMember.objects.get(pk=household_member1.pk).
registered_subject.subject_identifier.startswith('066'))
print 'consent household_member1 (it should find the existing registered subject and subject identifier)'
consent1 = SubjectConsentFactory(household_member=household_member1)
print consent1.subject_identifier
print HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier
print 'assert consent1 household member is household_member1'
print self.assertEqual(consent1.household_member.pk,
household_member1.pk)
print 'assert still one RS per HM'
self.assertEqual(HouseholdMember.objects.all().count(),
RegisteredSubject.objects.all().count() * 2)
print 'assert subject identifier on consent1 == subject identifier in registered_subject'
self.assertEqual(
consent1.subject_identifier,
RegisteredSubject.objects.get(
subject_identifier=consent1.subject_identifier).
subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.pk)
print 'assert consent1 registered subject subject identifier = household_member1 registered subject subject_identifier'
self.assertEqual(
consent1.registered_subject.subject_identifier,
HouseholdMember.objects.get(
pk=household_member1.pk).registered_subject.subject_identifier)
print 'assert consent1 registered subject pk = household_member1 registered subject pk for previous survey'
self.assertEqual(
consent1.registered_subject.pk,
HouseholdMember.objects.get(
pk=self.household_member1.pk).registered_subject.pk)
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
self.study_site = StudySite.objects.get(site_code='14')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
HouseholdMemberFactory(household_structure=self.household_structure)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials)
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
Quota.objects.create(app_label='bcpp_subject',
model_name='PimaVl',
target=1,
expires_datetime=timezone.now() +
timedelta(days=1))
self.assertEqual(1, Quota.objects.all().count())
class TestSubjectConsentForm(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
def create_household_log_entry(self, household_structure):
household_log = HouseholdLog.objects.filter(
household_structure=household_structure).last()
HouseholdLogEntry.objects.all().delete()
HouseholdLogEntryFactory(household_log=household_log)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_above_64_at_bhs(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.male_dob = date.today() - relativedelta(years=65)
self.data['dob'] = self.male_dob
self.data['household_member'] = self.household_member_male_T0.id
consent_form = SubjectConsentForm(data=self.data)
self.assertIn(
u"Subject's age is 65y. Subject is not eligible for consent.",
consent_form.errors.get("__all__"))
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_within_65_at_bhs(self):
""" For all participants within 65 at bhs are eligible."""
self.app_config.prep_survey_for_tests()
self.subject_consent_male.version = 2
self.subject_consent_male.save_base()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
dob = date.today() - relativedelta(years=64)
self.household_member_male_T0.age_in_years = 64
self.household_member_male_T0.save()
self.enrollment.dob = dob
self.enrollment.save_base()
self.data['dob'] = dob
self.data['identity'] = '317918514'
self.data['confirm_identity'] = '317918514'
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
consent_form.save()
self.assertEqual(
RegisteredSubject.objects.filter(
identity=self.data['identity']).count(), 1)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_above_64_at_ahs(self):
""" Test identity on
"""
dob = date.today() - relativedelta(years=65)
self.household_member_male_T0.age_in_years = 65
self.household_member_male_T0.save_base()
self.subject_consent_male.dob = dob
self.enrollment.dob = dob
self.enrollment.save_base()
self.subject_consent_male.save_base()
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs,
)
dob = date.today() - relativedelta(years=65)
self.household_member.age_in_years = 65
self.household_member.save_base()
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.enrollment.dob = dob
self.enrollment.save_base()
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.create_household_log_entry(self.household_structure_ahs)
self.data['dob'] = dob
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_within_65_at_ahs(self):
""" Test identity on
"""
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs)
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
self.create_household_log_entry(self.household_structure_ahs)
consent_form = SubjectConsentForm(data=self.data)
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_surname_marrige_at_ahs(self):
""" Test identity on
"""
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs)
self.household_member.personal_details_changed = YES
self.household_member.details_change_reason = 'married'
self.household_member.last_name = 'SETSIBA'
self.household_member.initials = 'ES'
self.household_member.save()
self.create_household_log_entry(self.household_structure_ahs)
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
self.data['last_name'] = 'SETSIBA'
self.data['initials'] = 'ES'
consent_form = SubjectConsentForm(data=self.data)
self.assertTrue(consent_form.is_valid())
consent_form.save()
consent = SubjectConsent.objects.get(
household_member=self.household_member)
consent_form = SubjectConsentForm(data=self.data, instance=consent)
consent_form.save()
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_validate_legal_marriage_at_bhs(self):
self.data['citizen'] = NO
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.data['legal_marriage'] = YES
self.data['marriage_certificate'] = YES
self.data['marriage_certificate_no'] = '12421'
self.enrollment.citizen = NO
self.enrollment.save_base()
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_validate_legal_marriage_at_bhs_not_valid(self):
self.data['citizen'] = NO
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.data['legal_marriage'] = YES
self.data['marriage_certificate'] = YES
self.enrollment.citizen = NO
self.enrollment.save_base()
consent_form = SubjectConsentForm(data=self.data)
self.assertIn(
u'You wrote subject is NOT a citizen and has marriage certificate. Please provide certificate number.',
consent_form.errors.get("__all__"))
self.assertFalse(consent_form.is_valid())
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
def test_updates_household_structure_counts(self):
"""Assert household_member updates household structure member_count and enrolled_member_count."""
self.assertEquals(self.household_structure.member_count, 0)
self.assertEquals(self.household_structure.enrolled_member_count, 0)
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=25,
study_resident='Yes',
initials='EE')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
initials=household_member.initials,
part_time_resident='Yes')
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 1)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 0)
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=25),
first_name='ERIKFIRST',
last_name='ERIKLAST',
initials=household_member.initials,
)
self.assertTrue(household_member.is_consented)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 1)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 1)
household_member = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=35,
study_resident='Yes',
initials='DD')
# who is an eligible subject
EnrollmentChecklistFactory(household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=35),
initials=household_member.initials,
part_time_resident='Yes')
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 2)
# who is consented
SubjectConsentFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=35),
first_name='DRIKFIRST',
last_name='DRIKLAST',
initials=household_member.initials,
)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).member_count, 2)
self.assertEquals(
HouseholdStructure.objects.get(
pk=self.household_structure.pk).enrolled_member_count, 2)
def setUp(self):
site_mappers.autodiscover()
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
mapper = site_mappers._registry_by_code.get('01')
mapper.survey_dates = {
'bcpp-year-1':
SurveyDatesTuple(name='bhs',
start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=-1) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=-1) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=-1) + relativedelta(days=89)),
'bcpp-year-2':
SurveyDatesTuple(name='t1',
start_date=date.today() + relativedelta(years=0) +
relativedelta(days=-89),
full_enrollment_date=date.today() +
relativedelta(years=0) + relativedelta(days=60),
end_date=date.today() + relativedelta(years=0) +
relativedelta(days=89),
smc_start_date=date.today() +
relativedelta(years=0) + relativedelta(days=89)),
}
bcpp_app_configuration.survey_setup = {
'bcpp-year-1': {
'survey_name':
'BCPP Year 1',
'survey_slug':
'bcpp-year-1',
'datetime_start':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=-1) +
relativedelta(days=30)
},
'bcpp-year-2': {
'survey_name': 'BCPP Year 2',
'survey_slug': 'bcpp-year-2',
'datetime_start': datetime.today() + relativedelta(days=-90),
'datetime_end': datetime.today() + relativedelta(days=90)
},
'bcpp-year-3': {
'survey_name':
'BCPP Year 3',
'survey_slug':
'bcpp-year-3',
'datetime_start':
datetime.today() + relativedelta(years=1) +
relativedelta(days=-30),
'datetime_end':
datetime.today() + relativedelta(years=1) +
relativedelta(days=30)
},
}
bcpp_app_configuration.prepare()
site_lab_tracker.autodiscover()
site_visit_schedules.autodiscover()
site_visit_schedules.build_all()
self.survey2 = Survey.objects.current_survey()
self.survey1 = Survey.objects.previous_survey()
plot = PlotFactory(community='test_community',
household_count=1,
status='residential_habitable')
self.household = Household.objects.get(plot=plot)
self.source_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey1)
self.target_household_structure = HouseholdStructure.objects.get(
household=self.household, survey=self.survey2)
self.representative_eligibility = RepresentativeEligibilityFactory(
household_structure=self.source_household_structure)
self.study_site = StudySite.objects.get(
site_code=site_mappers.get_current_mapper().map_code)
self.intervention = site_mappers.get_current_mapper().intervention
# add members to source
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
HouseholdMemberFactory(
household_structure=self.source_household_structure)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}
class TestMostRecentForm(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}
def create_household_log_entry(self, household_structure):
household_log = HouseholdLog.objects.filter(
household_structure=household_structure).last()
HouseholdLogEntry.objects.all().delete()
HouseholdLogEntryFactory(household_log=household_log)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_valid(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['first_partner_live'] = [parnter_residency.id]
recent_form = MonthsRecentPartnerForm(data=self.data)
self.assertTrue(recent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_valid1(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['first_partner_live'] = [parnter_residency.id]
self.data['concurrent'] = 'DWTA'
recent_form = MonthsRecentPartnerForm(data=self.data)
self.assertTrue(recent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_not_valid(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
print sexual_behaviour_form.errors
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['concurrent'] = YES
self.data['first_partner_live'] = [parnter_residency.id]
recent_form = MonthsRecentPartnerForm(data=self.data)
msg = "Please correct if you have sex with other partners"
err_msg = u"You wrote that you have only one partner ever in sexual behavior form. {}".format(
msg)
#self.assertIn(u"sex", recent_form.errors.get("__all__"))
self.assertFalse(recent_form.is_valid())
def test_p3(self):
instances = []
plot = PlotFactory(community='test_community6',
household_count=1,
status='residential_habitable')
Household.objects.get(plot=plot)
household_structure = HouseholdStructure.objects.get(
survey=Survey.objects.all()[0])
RepresentativeEligibilityFactory(
household_structure=household_structure)
household_member = HouseholdMemberFactory(
household_structure=household_structure)
enrollment_checklist = EnrollmentChecklistFactory(
household_member=household_member,
initials=household_member.initials,
has_identity='Yes',
dob=date(1989, 01, 01))
self.assertTrue(enrollment_checklist.is_eligible)
instances.append(enrollment_checklist)
self.assertEqual(RegisteredSubject.objects.all().count(), 1)
registered_subject = RegisteredSubject.objects.all()[0]
site = StudySite.objects.all()[0]
subject_consent = SubjectConsentFactory(
study_site=site,
household_member=household_member,
registered_subject=household_member.registered_subject,
dob=enrollment_checklist.dob,
initials=enrollment_checklist.initials)
instances.append(subject_consent)
self.assertEqual(Appointment.objects.all().count(), 1)
appointment = Appointment.objects.get(
registered_subject=registered_subject)
subject_visit = SubjectVisitFactory(household_member=household_member,
appointment=appointment)
instances.append(subject_visit)
aliquot_type = AliquotType.objects.all()[0]
panel = Panel.objects.all()[0]
subjects_requisition = SubjectRequisitionFactory(
subject_visit=subject_visit,
panel=panel,
site=site,
aliquot_type=aliquot_type,
)
self.assertEqual(Aliquot.objects.all().count(), 0)
subjects_requisition.is_receive = True
subjects_requisition.is_receive_datetime = datetime.now()
subjects_requisition.save()
lab_profile = site_labs.get(subjects_requisition._meta.object_name)
lab_profile().receive(subjects_requisition)
receive = Receive.objects.all()[0]
self.assertEqual(Aliquot.objects.all().count(), 1)
aliquot = Aliquot.objects.all()[0]
processing = ProcessingFactory(profile=AliquotProfile.objects.all()[0],
aliquot=aliquot)
for al in Aliquot.objects.all():
instances.append(al)
instances.append(processing)
instances.append(receive)
self.assertEqual(PackingListItem.objects.all().count(), 0)
packing_list = PackingListFactory(
list_items=aliquot.aliquot_identifier)
instances.append(packing_list)
packing_list.list_items = al.aliquot_identifier
packing_list.save()
for obj in instances:
natural_key = obj.natural_key()
get_obj = obj.__class__.objects.get_by_natural_key(*natural_key)
self.assertEqual(obj.pk, get_obj.pk)
for obj in instances:
outgoing_transaction = SerializeToTransaction().serialize(
obj.__class__, obj, False, True, 'default')
for transaction in serializers.deserialize(
"json",
FieldCryptor('aes',
'local').decrypt(outgoing_transaction.tx)):
self.assertEqual(transaction.object.pk, obj.pk)
