def test_eligible_members3(self):
"""Assert eligible_members set from True but stays True if an eligible member
is added then removed but others exist."""
SurveyFactory()
plot = PlotFactory(community=self.mapper().map_area,
household_count=3,
status='residential_habitable')
for household in Household.objects.filter(plot=plot):
household_log = HouseholdLog.objects.get(
household_structure__household=household)
household_log_entry = HouseholdLogEntryFactory(
household_log=household_log)
household_structure = household_log.household_structure
RepresentativeEligibilityFactory(
household_structure=household_structure)
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=10)
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=74)
HouseholdMemberFactory(household_structure=household_structure,
age_in_years=50)
household_member = HouseholdMemberFactory(
household_structure=household_structure, age_in_years=25)
household_structure = HouseholdStructure.objects.get(
pk=household_structure.pk)
household_member.age_in_years = 10
household_member.save()
self.assertTrue(household_structure.eligible_members)
def test_eligible_bhs(self):
"""Assert for eligible for BHS, household enrolled."""
#self.startup()
self.enroll_household()
household_member = HouseholdMemberFactory(first_name='ERIK', initials='EXW', age_in_years=64, study_resident='Yes', household_structure=self.household_structure)
household_member.member_status = BHS_SCREEN
household_member.save()
pk = household_member.pk
household_member = HouseholdMember.objects.get(pk=pk)
EnrollmentChecklistFactory(
household_member=household_member,
gender='M',
dob=date.today() - relativedelta(years=64),
guardian='No',
initials=household_member.initials,
part_time_resident='Yes')
pk = household_member.pk
household_member = HouseholdMember.objects.get(pk=pk)
options = [BHS, BHS_ELIGIBLE, DECEASED, REFUSED]
options.append(household_member.member_status)
options = list(set(options))
options.sort()
member_status_choices = [(item, item) for item in options]
x = household_member.member_status_choices
# print x
# print member_status_choices
self.assertEqual(x, member_status_choices)
def test_refused_bhs_and_consent_later(self):
"""Assert for refused BHS, household not enrolled and BHS_SCREEN still available as option."""
#self.startup()
household_member = HouseholdMemberFactory(first_name='ERIK', initials='EXW', age_in_years=64, study_resident='Yes', household_structure=self.household_structure)
household_member.member_status = REFUSED
household_member.save(update_fields=['member_status'])
self.assertEqual(household_member.member_status, REFUSED)
subject_refusal = SubjectRefusalFactory(household_member=household_member)
self.assertEqual(subject_refusal.household_member.member_status, REFUSED)
self.assertTrue(subject_refusal.household_member.refused)
options = [BHS_SCREEN, DECEASED]
options.append(household_member.member_status)
options = list(set(options))
options.sort()
# print options
member_status_choices = [(item, item) for item in options]
x = household_member.member_status_choices
# print x
self.assertEqual(x, member_status_choices)
def test_eligible_bhs_and_htc_and_refused_bhs(self):
"""Assert for eligible for BHS, household is enrolled, and eligible for HTC since has refused BHS."""
#self.startup()
household_member = self.enroll_household()
household_member = HouseholdMemberFactory(first_name='ERIK', initials='EXW', age_in_years=64, study_resident='Yes', household_structure=household_member.household_structure)
household_member.member_status = REFUSED
household_member.save(update_fields=['member_status'])
self.assertEqual(household_member.member_status, REFUSED)
subject_refusal = SubjectRefusalFactory(household_member=household_member)
self.assertEqual(subject_refusal.household_member.member_status, HTC_ELIGIBLE)
self.assertTrue(subject_refusal.household_member.refused)
self.assertTrue(subject_refusal.household_member.eligible_htc)
options = [BHS_SCREEN, HTC_ELIGIBLE]
options.append(subject_refusal.household_member.member_status)
options = list(set(options))
options.sort()
member_status_choices = [(item, item) for item in options]
x = subject_refusal.household_member.member_status_choices
self.assertEqual(x, member_status_choices)
class TestCorrectConsent(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
self.study_site = StudySite.objects.get(site_code='01')
self.survey = Survey.objects.all()[0]
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey = Survey.objects.all().order_by('datetime_start')[0]
next_survey = Survey.objects.all().order_by('datetime_start')[1]
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=next_survey)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
self.female_dob = date(1989, 10, 10)
self.female_age_in_years = relativedelta(date.today(),
self.female_dob).years
self.female_first_name = 'ERIKA'
self.female_last_name = 'WAXON'
self.female_initials = "EW"
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=self.female_age_in_years,
first_name=self.female_first_name,
initials=self.female_initials)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.assertEqual(self.household_member_female_T0.member_status,
'BHS_SCREEN')
self.enrollment_checklist_female = EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen='Yes',
dob=self.female_dob,
guardian='No',
initials=self.household_member_female_T0.initials,
part_time_resident='Yes')
self.subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
study_site=self.study_site,
gender='F',
dob=self.female_dob,
first_name=self.female_first_name,
last_name=self.female_last_name,
initials=self.female_initials)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_female.subject_identifier)
enumeration_helper = EnumerationHelper(
self.household_structure.household, survey, next_survey)
self.household_member_female = enumeration_helper.create_member_on_target(
self.household_member_female_T0)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.locator_female_T0 = SubjectLocatorFactory(
subject_visit=self.subject_visit_female_T0,
registered_subject=self.registered_subject_female)
self.residency_mobility_female_T0 = ResidencyMobilityFactory(
subject_visit=self.subject_visit_female_T0)
microtube_panel = Panel.objects.get(name='Microtube')
aliquot_type = AliquotType.objects.all()[0]
self.subject_requisition_T0 = SubjectRequisitionFactory(
subject_visit=self.subject_visit_female_T0,
panel=microtube_panel,
aliquot_type=aliquot_type)
self.hiv_result_today_T0 = HivResultFactory(
subject_visit=self.subject_visit_female_T0, hiv_result=NEG)
def test_lastname_and_initials(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_last_name=self.female_last_name,
new_last_name='DIMSTAR',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.initials, 'ED')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).initials, 'ED')
self.assertEquals(subject_consent.initials, 'ED')
self.assertEquals(subject_consent.last_name, 'DIMSTAR')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_firstname_and_initials(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_first_name=self.female_first_name,
new_first_name='GAME',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).initials, 'GW')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).initials, 'GW')
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).first_name, 'GAME')
self.assertEquals(subject_consent.first_name, 'GAME')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_dob(self):
hic = HicEnrollmentFactory(subject_visit=self.subject_visit_female_T0,
dob=self.female_dob)
new_dob = date(1988, 1, 1)
age_in_years = relativedelta(
self.subject_consent_female.consent_datetime, new_dob).years
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_dob=self.female_dob,
new_dob=new_dob,
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).age_in_years,
age_in_years)
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).dob, new_dob)
self.assertEquals(subject_consent.dob, new_dob)
self.assertEquals(
HicEnrollment.objects.get(
subject_visit=self.subject_visit_female_T0).dob, new_dob)
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
self.assertEquals(hic.user_modified, correct_consent.user_created)
def test_gender(self):
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_gender='F',
new_gender='M',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(
HouseholdMember.objects.get(
id=self.household_member_female_T0.id).gender, 'M')
self.assertEquals(
EnrollmentChecklist.objects.get(
id=self.enrollment_checklist_female.id).gender, 'M')
self.assertEquals(subject_consent.gender, 'M')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_witness(self):
self.subject_consent_female.witness_name = 'DIMO'
self.subject_consent_female.save(update_fields=['witness_name'])
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_witness_name='DIMO',
new_witness_name='BIMO',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.witness_name, 'BIMO')
self.assertFalse(subject_consent.is_verified)
self.assertIsNone(subject_consent.is_verified_datetime)
self.assertIsNone(subject_consent.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
def test_to_unverify_consent(self):
self.subject_consent_female.witness_name = 'DIMO'
self.assertFalse(self.subject_consent_female.is_verified)
self.assertIsNone(self.subject_consent_female.is_verified_datetime)
self.assertIsNone(self.subject_consent_female.verified_by)
self.subject_consent_female.is_verified = True
self.subject_consent_female.is_verified_datetime = datetime(
2016, 4, 18, 10, 3, 42, 215477)
self.subject_consent_female.verified_by = 'ckgathi'
self.subject_consent_female.save(update_fields=[
'witness_name', 'verified_by', 'is_verified_datetime',
'is_verified'
])
self.assertTrue(self.subject_consent_female.is_verified)
self.assertEqual(self.subject_consent_female.is_verified_datetime,
datetime(2016, 4, 18, 10, 3, 42, 215477))
self.assertEqual(self.subject_consent_female.verified_by, 'ckgathi')
correct_consent = CorrectConsentFactory(
subject_consent=self.subject_consent_female,
old_witness_name='DIMO',
new_witness_name='BIMO',
)
subject_consent = SubjectConsent.objects.get(
id=self.subject_consent_female.id)
self.assertEquals(subject_consent.witness_name, 'BIMO')
self.assertFalse(self.subject_consent_female.is_verified)
self.assertIsNone(self.subject_consent_female.is_verified_datetime)
self.assertIsNone(self.subject_consent_female.verified_by)
if not correct_consent.id:
self.assertEquals(subject_consent.user_modified,
correct_consent.user_created)
class BaseRuleGroupTestSetup(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
def setUp(self):
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
BcppAppConfiguration().prepare()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
survey_T0 = Survey.objects.get(survey_slug='bcpp-year-1')
survey_T1 = Survey.objects.get(survey_slug='bcpp-year-2')
survey_T2 = Survey.objects.get(survey_slug='bcpp-year-3')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T0)
self.household_structure_y2 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T1)
self.household_structure_y3 = HouseholdStructure.objects.get(
household__plot=plot, survey=survey_T2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y2)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_y3)
HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
#HouseholdMemberFactory(household_structure=self.household_structure)
male_dob = date.today() - relativedelta(years=25)
male_age_in_years = 25
male_first_name = 'ERIK'
male_initials = "EW"
female_dob = date.today() - relativedelta(years=35)
female_age_in_years = 35
female_first_name = 'ERIKA'
female_initials = "EW"
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456467')
self.household_member_female_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='F',
age_in_years=female_age_in_years,
first_name=female_first_name,
initials=female_initials,
registered_subject=registered_subject)
registered_subject = RegisteredSubjectFactory(
registration_identifier='123456468')
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure,
gender='M',
age_in_years=male_age_in_years,
first_name=male_first_name,
initials=male_initials,
registered_subject=registered_subject)
self.household_member_female_T0.member_status = 'BHS_SCREEN'
self.household_member_male_T0.member_status = 'BHS_SCREEN'
self.household_member_female_T0.save()
self.household_member_male_T0.save()
EnrollmentChecklistFactory(
household_member=self.household_member_female_T0,
gender='F',
citizen=YES,
dob=female_dob,
guardian=NO,
initials=self.household_member_female_T0.initials,
part_time_resident=YES)
EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen=YES,
dob=male_dob,
guardian=NO,
initials=self.household_member_male_T0.initials,
part_time_resident=YES)
subject_consent_female = SubjectConsentFactory(
household_member=self.household_member_female_T0,
confirm_identity='101129811',
identity='101129811',
study_site=self.study_site,
gender='F',
dob=female_dob,
first_name=female_first_name,
initials=female_initials)
subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=male_dob,
first_name=male_first_name,
initials=male_initials)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure.household,
survey=survey_T0,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T2 = EnumerationHelper(
self.household_structure.household, survey_T0, survey_T1)
enumeration_helper_T2.add_members_from_survey()
self.household_member_female = HouseholdMember.objects.get(
internal_identifier=self.household_member_female_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.household_member_male = HouseholdMember.objects.get(
internal_identifier=self.household_member_male_T0.
internal_identifier,
household_structure__survey=survey_T1)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y2.household,
survey=survey_T1,
enumerated=True,
enrolled=True).count(), 1)
enumeration_helper_T3 = EnumerationHelper(
self.household_structure.household, survey_T1, survey_T2)
enumeration_helper_T3.add_members_from_survey()
self.household_member_female_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_female.
internal_identifier,
household_structure__survey=survey_T2)
self.household_member_male_T2 = HouseholdMember.objects.get(
internal_identifier=self.household_member_male.internal_identifier,
household_structure__survey=survey_T2)
self.assertEqual(
HouseholdStructure.objects.filter(
household=self.household_structure_y3.household,
survey=survey_T2,
enumerated=True,
enrolled=True).count(), 1)
self.registered_subject_female = RegisteredSubject.objects.get(
subject_identifier=subject_consent_female.subject_identifier)
self.registered_subject_male = RegisteredSubject.objects.get(
subject_identifier=subject_consent_male.subject_identifier)
self.appointment_female = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T1')
self.appointment_female_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T0')
self.appointment_female_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_female,
visit_definition__code='T2')
self.subject_visit_female_T0 = SubjectVisitFactory(
appointment=self.appointment_female_T0,
household_member=self.household_member_female_T0)
self.subject_visit_female = SubjectVisitFactory(
appointment=self.appointment_female,
household_member=self.household_member_female)
self.subject_visit_female_T2 = SubjectVisitFactory(
appointment=self.appointment_female_T2,
household_member=self.household_member_female_T2)
self.appointment_male = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T1')
self.appointment_male_T0 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T0')
self.appointment_male_T2 = Appointment.objects.get(
registered_subject=self.registered_subject_male,
visit_definition__code='T2')
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.subject_visit_male = SubjectVisitFactory(
appointment=self.appointment_male,
household_member=self.household_member_male)
self.subject_visit_male_T2 = SubjectVisitFactory(
appointment=self.appointment_male_T2,
household_member=self.household_member_male_T2)
def check_male_registered_subject_rule_groups(self, subject_visit):
circumsition_options = {}
circumsition_options.update(entry__app_label='bcpp_subject',
entry__model_name='circumcision',
appointment=subject_visit.appointment)
circumcised_options = {}
circumcised_options.update(entry__app_label='bcpp_subject',
entry__model_name='circumcised',
appointment=subject_visit.appointment)
uncircumcised_options = {}
uncircumcised_options.update(entry__app_label='bcpp_subject',
entry__model_name='uncircumcised',
appointment=subject_visit.appointment)
reproductivehealth_options = {}
reproductivehealth_options.update(
entry__app_label='bcpp_subject',
entry__model_name='reproductivehealth',
appointment=subject_visit.appointment)
pregnancy_options = {}
pregnancy_options.update(entry__app_label='bcpp_subject',
entry__model_name='pregnancy',
appointment=subject_visit.appointment)
nonpregnancy_options = {}
nonpregnancy_options.update(entry__app_label='bcpp_subject',
entry__model_name='nonpregnancy',
appointment=subject_visit.appointment)
if subject_visit == self.subject_visit_male_T0:
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **circumsition_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **circumcised_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **uncircumcised_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED,
**reproductivehealth_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED, **pregnancy_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED, **nonpregnancy_options).count(),
1)
else:
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **reproductivehealth_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **pregnancy_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NEW, **nonpregnancy_options).count(), 1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED, **circumsition_options).count(),
1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED, **circumcised_options).count(),
1)
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
entry_status=NOT_REQUIRED,
**uncircumcised_options).count(), 1)
def new_metadata_is_not_keyed(self):
self.assertEquals(
ScheduledEntryMetaData.objects.filter(
entry_status=KEYED,
appointment=self.subject_visit_male.appointment).count(), 0)
self.assertEquals(
RequisitionMetaData.objects.filter(
entry_status=KEYED,
appointment=self.subject_visit_male.appointment).count(), 0)
@property
def baseline_subject_visit(self):
""" Return baseline subject visit"""
self.subject_visit_male_T0.delete()
self.subject_visit_male_T0 = SubjectVisitFactory(
appointment=self.appointment_male_T0,
household_member=self.household_member_male_T0)
self.check_male_registered_subject_rule_groups(
self.subject_visit_male_T0)
return self.subject_visit_male_T0
@property
def annual_subject_visit_y2(self):
""" Return annuall subject visit """
self.subject_visit_male.delete()
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
appointment=self.appointment_male).count(), 0)
self.subject_visit_male = SubjectVisitFactory(
appointment=self.appointment_male,
household_member=self.household_member_male)
return self.subject_visit_male
@property
def annual_subject_visit_y3(self):
""" Return annuall subject visit """
self.subject_visit_male_T2.delete()
self.assertEqual(
ScheduledEntryMetaData.objects.filter(
appointment=self.appointment_male_T2).count(), 0)
self.subject_visit_male_T2 = SubjectVisitFactory(
appointment=self.appointment_male_T2,
household_member=self.household_member_male_T2)
return self.subject_visit_male_T2
def hiv_result(self, status, subject_visit):
""" Create HivResult for a particular survey"""
aliquot_type = AliquotType.objects.all()[0]
site = StudySite.objects.all()[0]
microtube_panel = Panel.objects.get(name='Microtube')
SubjectRequisitionFactory(subject_visit=subject_visit,
panel=microtube_panel,
aliquot_type=aliquot_type,
site=site)
self._hiv_result = HivResult.objects.create(
subject_visit=subject_visit,
hiv_result=status,
report_datetime=datetime.today(),
insufficient_vol=NO)
return self._hiv_result
class TestSubjectConsentForm(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.data = {
'last_name':
'WIZZY',
'is_minor':
'No',
'witness_name':
None,
'is_literate':
'Yes',
'subject_type':
'subject',
'consent_copy':
'Yes',
'is_verified':
False,
'consent_signature':
None,
'first_name':
'ERIK',
'dm_comment':
None,
'is_dob_estimated':
None,
'verified_by':
None,
'user_modified':
u'',
'is_signed':
True,
'is_verified_datetime':
None,
'subject_identifier_aka':
None,
'version':
u'4',
'citizen':
'Yes',
'legal_marriage':
u'N/A',
'assessment_score':
'Yes',
'is_incarcerated':
'No',
'consent_reviewed':
'Yes',
'study_questions':
'Yes',
'sid':
None,
'study_site_id':
self.study_site.id,
'may_store_samples':
YES,
'consent_version_recent':
None,
'subject_identifier':
self.household_member_male_T0.registered_subject.
subject_identifier,
'subject_identifier_as_pk':
self.household_member_male_T0.registered_subject.id,
'community':
u'test_community',
'using':
'default',
'marriage_certificate_no':
None,
'identity':
'317918515',
'confirm_identity':
'317918515',
'registered_subject_id':
self.household_member_male_T0.registered_subject.id,
'identity_type':
'OMANG',
'language':
u'not specified',
'guardian_name':
None,
'gender':
'M',
'household_member':
self.household_member_male_T0.id,
'marriage_certificate':
u'N/A',
'dob':
self.male_dob,
'study_site':
self.study_site.id,
'initials':
'EW',
'language':
'en',
'is_dob_estimated':
'-',
'consent_signature':
YES,
'consent_datetime':
datetime.today(),
'version':
1
}
def create_household_log_entry(self, household_structure):
household_log = HouseholdLog.objects.filter(
household_structure=household_structure).last()
HouseholdLogEntry.objects.all().delete()
HouseholdLogEntryFactory(household_log=household_log)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_above_64_at_bhs(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.male_dob = date.today() - relativedelta(years=65)
self.data['dob'] = self.male_dob
self.data['household_member'] = self.household_member_male_T0.id
consent_form = SubjectConsentForm(data=self.data)
self.assertIn(
u"Subject's age is 65y. Subject is not eligible for consent.",
consent_form.errors.get("__all__"))
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_within_65_at_bhs(self):
""" For all participants within 65 at bhs are eligible."""
self.app_config.prep_survey_for_tests()
self.subject_consent_male.version = 2
self.subject_consent_male.save_base()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
dob = date.today() - relativedelta(years=64)
self.household_member_male_T0.age_in_years = 64
self.household_member_male_T0.save()
self.enrollment.dob = dob
self.enrollment.save_base()
self.data['dob'] = dob
self.data['identity'] = '317918514'
self.data['confirm_identity'] = '317918514'
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
consent_form.save()
self.assertEqual(
RegisteredSubject.objects.filter(
identity=self.data['identity']).count(), 1)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_above_64_at_ahs(self):
""" Test identity on
"""
dob = date.today() - relativedelta(years=65)
self.household_member_male_T0.age_in_years = 65
self.household_member_male_T0.save_base()
self.subject_consent_male.dob = dob
self.enrollment.dob = dob
self.enrollment.save_base()
self.subject_consent_male.save_base()
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs,
)
dob = date.today() - relativedelta(years=65)
self.household_member.age_in_years = 65
self.household_member.save_base()
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.enrollment.dob = dob
self.enrollment.save_base()
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.create_household_log_entry(self.household_structure_ahs)
self.data['dob'] = dob
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_consent_age_within_65_at_ahs(self):
""" Test identity on
"""
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs)
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
self.create_household_log_entry(self.household_structure_ahs)
consent_form = SubjectConsentForm(data=self.data)
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_surname_marrige_at_ahs(self):
""" Test identity on
"""
self.app_config.prep_survey_for_tests()
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
enumeration_helper = EnumerationHelper(
self.household_structure_ahs.household, self.survey_bhs,
self.survey_ahs)
enumeration_helper.add_members_from_survey()
self.household_member = HouseholdMember.objects.get(
registered_subject__identity='101119811',
household_structure__survey=self.survey_ahs)
self.household_member.personal_details_changed = YES
self.household_member.details_change_reason = 'married'
self.household_member.last_name = 'SETSIBA'
self.household_member.initials = 'ES'
self.household_member.save()
self.create_household_log_entry(self.household_structure_ahs)
HeadHouseholdEligibilityFactory(
household_member=self.household_member,
household_structure=self.household_member.household_structure)
self.subject_consent = SubjectConsent.objects.get(
household_member=self.household_member_male_T0)
self.subject_consent.version = 2
self.subject_consent.save_base()
self.data['household_member'] = self.household_member.id
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
self.data['last_name'] = 'SETSIBA'
self.data['initials'] = 'ES'
consent_form = SubjectConsentForm(data=self.data)
self.assertTrue(consent_form.is_valid())
consent_form.save()
consent = SubjectConsent.objects.get(
household_member=self.household_member)
consent_form = SubjectConsentForm(data=self.data, instance=consent)
consent_form.save()
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_validate_legal_marriage_at_bhs(self):
self.data['citizen'] = NO
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.data['legal_marriage'] = YES
self.data['marriage_certificate'] = YES
self.data['marriage_certificate_no'] = '12421'
self.enrollment.citizen = NO
self.enrollment.save_base()
consent_form = SubjectConsentForm(data=self.data)
print consent_form.errors
self.assertTrue(consent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_validate_legal_marriage_at_bhs_not_valid(self):
self.data['citizen'] = NO
self.data['identity'] = '101119811'
self.data['confirm_identity'] = '101119811'
from bhp066.apps.bcpp_subject.forms.subject_consent_form import SubjectConsentForm
self.data['legal_marriage'] = YES
self.data['marriage_certificate'] = YES
self.enrollment.citizen = NO
self.enrollment.save_base()
consent_form = SubjectConsentForm(data=self.data)
self.assertIn(
u'You wrote subject is NOT a citizen and has marriage certificate. Please provide certificate number.',
consent_form.errors.get("__all__"))
self.assertFalse(consent_form.is_valid())
class TestMostRecentForm(TestCase):
app_label = 'bcpp_subject'
community = 'test_community'
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-2',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def setUp(self):
site_mappers.autodiscover()
from bhp066.apps.bcpp_subject.visit_schedule import BcppSubjectVisitSchedule
try:
site_lab_profiles.register(BcppSubjectProfile())
except AlreadyRegisteredLabProfile:
pass
self.app_config = BcppAppConfiguration()
self.app_config.prepare()
self.app_config.prep_survey_for_tests()
site_lab_tracker.autodiscover()
BcppSubjectVisitSchedule().build()
site_rule_groups.autodiscover()
plot = PlotFactory(community=self.community,
household_count=1,
status='residential_habitable')
self.survey_bhs = Survey.objects.get(survey_slug='bcpp-year-1')
self.survey_ahs = Survey.objects.get(survey_slug='bcpp-year-2')
self.study_site = StudySite.objects.get(site_code='01')
self.household_structure_bhs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_bhs)
self.household_structure_ahs = HouseholdStructure.objects.get(
household__plot=plot, survey=self.survey_ahs)
self.create_household_log_entry(self.household_structure_bhs)
RepresentativeEligibilityFactory(
household_structure=self.household_structure_bhs)
self.male_dob = date.today() - relativedelta(years=25)
self.male_age_in_years = 25
self.male_first_name = 'ERIK'
self.male_last_name = 'HIEWAI'
self.male_initials = "EW"
self.household_member_male_T0 = HouseholdMemberFactory(
household_structure=self.household_structure_bhs,
gender='M',
age_in_years=self.male_age_in_years,
first_name=self.male_first_name,
initials=self.male_initials)
HeadHouseholdEligibilityFactory(
household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs)
self.household_member_male_T0.eligible_hoh = True
self.household_member_male_T0.save()
HouseholdInfoFactory(household_member=self.household_member_male_T0,
household_structure=self.household_structure_bhs,
registered_subject=self.household_member_male_T0.
registered_subject)
self.enrollment = EnrollmentChecklistFactory(
household_member=self.household_member_male_T0,
gender='M',
citizen='Yes',
dob=self.male_dob,
guardian='No',
initials=self.household_member_male_T0.initials,
part_time_resident='Yes')
self.subject_consent_male = SubjectConsentFactory(
household_member=self.household_member_male_T0,
confirm_identity='101119811',
identity='101119811',
study_site=self.study_site,
gender='M',
dob=self.male_dob,
first_name=self.male_first_name,
initials=self.male_initials)
self.appointment = Appointment.objects.get(
registered_subject=self.household_member_male_T0.
registered_subject,
visit_definition__code='T0')
self.subject_visit = SubjectVisitFactory(
household_member=self.household_member_male_T0,
appointment=self.appointment)
self.registered_subject = RegisteredSubject.objects.get(
subject_identifier=self.subject_consent_male.subject_identifier)
self.sexual_data = {
'subject_visit': self.subject_visit.id,
'alcohol_sex': 'Myself',
'report_datetime': datetime.today(),
'condom': NO,
'more_sex': NO,
'ever_sex': YES,
'first_sex': 20,
'last_year_partners': None,
'lifetime_sex_partners': 1,
'more_sex': None,
'subject_visit_id': None,
'user_modified': u'',
}
self.data = {
'subject_visit': self.subject_visit.id,
'concurrent': NO,
'first_partner_live': None,
'first_condom_freq': u'Sometimes',
'first_disclose': u'Yes',
'first_exchange': u'30-39',
'first_first_sex': u'Years',
'first_first_sex_calc': 3L,
'first_haart': None,
'first_partner_arm': None,
'first_partner_cp': u'No',
'first_partner_hiv': u'not_sure',
'first_relationship': u'Long-term partner',
'first_sex_current': u'Yes',
'first_sex_freq': None,
'goods_exchange': u'No',
'partner_hiv_test': u'not_sure',
'past_year_sex_freq': u'About once a month',
'report_datetime': datetime.today(),
'sex_partner_community': u'N/A',
'subject_visit_id': None,
'third_last_sex': u'Days',
'third_last_sex_calc': 7L,
'user_modified': u''
}
def create_household_log_entry(self, household_structure):
household_log = HouseholdLog.objects.filter(
household_structure=household_structure).last()
HouseholdLogEntry.objects.all().delete()
HouseholdLogEntryFactory(household_log=household_log)
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_valid(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['first_partner_live'] = [parnter_residency.id]
recent_form = MonthsRecentPartnerForm(data=self.data)
self.assertTrue(recent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_valid1(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['first_partner_live'] = [parnter_residency.id]
self.data['concurrent'] = 'DWTA'
recent_form = MonthsRecentPartnerForm(data=self.data)
self.assertTrue(recent_form.is_valid())
@override_settings(
SITE_CODE='01',
CURRENT_COMMUNITY='test_community',
CURRENT_SURVEY='bcpp-year-1',
CURRENT_COMMUNITY_CHECK=False,
LIMIT_EDIT_TO_CURRENT_SURVEY=True,
LIMIT_EDIT_TO_CURRENT_COMMUNITY=True,
FILTERED_DEFAULT_SEARCH=True,
)
def test_subject_recent_form_not_valid(self):
""" For all participants who are above 64 at bhs are not eligible."""
from bhp066.apps.bcpp_subject.forms.months_partner_form import MonthsRecentPartnerForm
from bhp066.apps.bcpp_subject.forms.sexual_behaviour_form import SexualBehaviourForm
sexual_behaviour_form = SexualBehaviourForm(data=self.sexual_data)
sexual_behaviour_form.save()
print sexual_behaviour_form.errors
self.assertTrue(sexual_behaviour_form.is_valid())
from bhp066.apps.bcpp_list.models import PartnerResidency
parnter_residency = PartnerResidency.objects.create(
name='In this community.')
self.data['concurrent'] = YES
self.data['first_partner_live'] = [parnter_residency.id]
recent_form = MonthsRecentPartnerForm(data=self.data)
msg = "Please correct if you have sex with other partners"
err_msg = u"You wrote that you have only one partner ever in sexual behavior form. {}".format(
msg)
#self.assertIn(u"sex", recent_form.errors.get("__all__"))
self.assertFalse(recent_form.is_valid())
