def test_msa_paper_retrieval_failure(): content = KQMLList('GET-PAPER-MODEL') content.sets('pmid', 'PMID-00000123') msa = msa_module.MSA_Module(testing=True) resp = msa.respond_get_paper_model(content) assert resp.head() == 'SUCCESS', str(resp) assert resp.get('relations-found') == 0, resp
def _get_message(heading, target=None, residue=None, position=None): msa = msa_module.MSA_Module(testing=True) content = KQMLList(heading) if target is not None: content.sets('target', target) if residue and position: content.sets('site', '%s-%s' % (residue, position)) return msa.respond_phosphorylation_activating(content)
def _get_message(heading, target=None, residue=None, position=None): msa = msa_module.MSA_Module(testing=True) content = KQMLList(heading) if target is not None: content.sets('target', ekb_from_text(target)) for name, value in [('residue', residue), ('position', position)]: if value is not None: content.sets(name, value) return msa.respond_phosphorylation_activating(content)