def test_msa_paper_retrieval_failure():
content = KQMLList('GET-PAPER-MODEL')
content.sets('pmid', 'PMID-00000123')
msa = msa_module.MSA_Module(testing=True)
resp = msa.respond_get_paper_model(content)
assert resp.head() == 'SUCCESS', str(resp)
assert resp.get('relations-found') == 0, resp
def _get_message(heading, target=None, residue=None, position=None):
msa = msa_module.MSA_Module(testing=True)
content = KQMLList(heading)
if target is not None:
content.sets('target', target)
if residue and position:
content.sets('site', '%s-%s' % (residue, position))
return msa.respond_phosphorylation_activating(content)
def _get_message(heading, target=None, residue=None, position=None):
msa = msa_module.MSA_Module(testing=True)
content = KQMLList(heading)
if target is not None:
content.sets('target', ekb_from_text(target))
for name, value in [('residue', residue), ('position', position)]:
if value is not None:
content.sets(name, value)
return msa.respond_phosphorylation_activating(content)