Python set_stream_logger Exemples

Exemple #1

Fichier : TestGalaxyObjects.py Projet : kidaak/bioblend

import tempfile
import uuid

import six
from six.moves.urllib.request import urlopen
from six.moves.urllib.error import URLError

import bioblend
import bioblend.galaxy.objects.wrappers as wrappers
import bioblend.galaxy.objects.galaxy_instance as galaxy_instance
from bioblend import ConnectionError

import test_util
from test_util import unittest

bioblend.set_stream_logger("test", level="INFO")
socket.setdefaulttimeout(10.0)
THIS_DIR = os.path.dirname(os.path.abspath(__file__))
SAMPLE_FN = os.path.join(THIS_DIR, "data", "paste_columns.ga")
SAMPLE_WF_COLL_FN = os.path.join(THIS_DIR, "data", "paste_columns_collections.ga")
FOO_DATA = "foo\nbar\n"
FOO_DATA_2 = "foo2\nbar2\n"
SAMPLE_WF_DICT = {
    "deleted": False,
    "id": "9005c5112febe774",
    "inputs": {"571": {"label": "Input Dataset", "value": ""}, "572": {"label": "Input Dataset", "value": ""}},
    "model_class": "StoredWorkflow",
    "name": "paste_columns",
    "published": False,
    "steps": {
        "571": {

Exemple #2

import uuid

import six
from six.moves.urllib.error import URLError
from six.moves.urllib.request import urlopen

import bioblend
import bioblend.galaxy.objects.galaxy_instance as galaxy_instance
import bioblend.galaxy.objects.wrappers as wrappers
from bioblend import ConnectionError
from bioblend.galaxy import dataset_collections

from . import test_util
from .test_util import unittest

bioblend.set_stream_logger('test', level='INFO')
socket.setdefaulttimeout(10.0)
SAMPLE_FN = test_util.get_abspath(os.path.join('data', 'paste_columns.ga'))
SAMPLE_WF_COLL_FN = test_util.get_abspath(os.path.join('data', 'paste_columns_collections.ga'))
FOO_DATA = 'foo\nbar\n'
FOO_DATA_2 = 'foo2\nbar2\n'
SAMPLE_WF_DICT = {
    'deleted': False,
    'id': '9005c5112febe774',
    'inputs': {
        '571': {'label': 'Input Dataset', 'value': ''},
        '572': {'label': 'Input Dataset', 'value': ''},
    },
    'model_class': 'StoredWorkflow',
    'name': 'paste_columns',
    'published': False,

Exemple #3

Fichier : TestGalaxyObjects.py Projet : galaxyproject/bioblend

import tempfile
import unittest
import uuid
from ssl import SSLError
from urllib.error import URLError
from urllib.request import urlopen

import bioblend
from bioblend.galaxy import dataset_collections
from bioblend.galaxy.objects import (
    galaxy_instance,
    wrappers,
)
from . import test_util

bioblend.set_stream_logger('test', level='INFO')
socket.setdefaulttimeout(10.0)
SAMPLE_FN = test_util.get_abspath(os.path.join('data', 'paste_columns.ga'))
SAMPLE_WF_COLL_FN = test_util.get_abspath(
    os.path.join('data', 'paste_columns_collections.ga'))
SAMPLE_WF_PARAMETER_INPUT_FN = test_util.get_abspath(
    os.path.join('data', 'workflow_with_parameter_input.ga'))
FOO_DATA = 'foo\nbar\n'
FOO_DATA_2 = 'foo2\nbar2\n'
SAMPLE_WF_DICT = {
    'deleted': False,
    'id': '9005c5112febe774',
    'inputs': {
        '571': {
            'label': 'Input Dataset',
            'value': ''