import tempfile import uuid import six from six.moves.urllib.request import urlopen from six.moves.urllib.error import URLError import bioblend import bioblend.galaxy.objects.wrappers as wrappers import bioblend.galaxy.objects.galaxy_instance as galaxy_instance from bioblend import ConnectionError import test_util from test_util import unittest bioblend.set_stream_logger("test", level="INFO") socket.setdefaulttimeout(10.0) THIS_DIR = os.path.dirname(os.path.abspath(__file__)) SAMPLE_FN = os.path.join(THIS_DIR, "data", "paste_columns.ga") SAMPLE_WF_COLL_FN = os.path.join(THIS_DIR, "data", "paste_columns_collections.ga") FOO_DATA = "foo\nbar\n" FOO_DATA_2 = "foo2\nbar2\n" SAMPLE_WF_DICT = { "deleted": False, "id": "9005c5112febe774", "inputs": {"571": {"label": "Input Dataset", "value": ""}, "572": {"label": "Input Dataset", "value": ""}}, "model_class": "StoredWorkflow", "name": "paste_columns", "published": False, "steps": { "571": {
import uuid import six from six.moves.urllib.error import URLError from six.moves.urllib.request import urlopen import bioblend import bioblend.galaxy.objects.galaxy_instance as galaxy_instance import bioblend.galaxy.objects.wrappers as wrappers from bioblend import ConnectionError from bioblend.galaxy import dataset_collections from . import test_util from .test_util import unittest bioblend.set_stream_logger('test', level='INFO') socket.setdefaulttimeout(10.0) SAMPLE_FN = test_util.get_abspath(os.path.join('data', 'paste_columns.ga')) SAMPLE_WF_COLL_FN = test_util.get_abspath(os.path.join('data', 'paste_columns_collections.ga')) FOO_DATA = 'foo\nbar\n' FOO_DATA_2 = 'foo2\nbar2\n' SAMPLE_WF_DICT = { 'deleted': False, 'id': '9005c5112febe774', 'inputs': { '571': {'label': 'Input Dataset', 'value': ''}, '572': {'label': 'Input Dataset', 'value': ''}, }, 'model_class': 'StoredWorkflow', 'name': 'paste_columns', 'published': False,
import tempfile import unittest import uuid from ssl import SSLError from urllib.error import URLError from urllib.request import urlopen import bioblend from bioblend.galaxy import dataset_collections from bioblend.galaxy.objects import ( galaxy_instance, wrappers, ) from . import test_util bioblend.set_stream_logger('test', level='INFO') socket.setdefaulttimeout(10.0) SAMPLE_FN = test_util.get_abspath(os.path.join('data', 'paste_columns.ga')) SAMPLE_WF_COLL_FN = test_util.get_abspath( os.path.join('data', 'paste_columns_collections.ga')) SAMPLE_WF_PARAMETER_INPUT_FN = test_util.get_abspath( os.path.join('data', 'workflow_with_parameter_input.ga')) FOO_DATA = 'foo\nbar\n' FOO_DATA_2 = 'foo2\nbar2\n' SAMPLE_WF_DICT = { 'deleted': False, 'id': '9005c5112febe774', 'inputs': { '571': { 'label': 'Input Dataset', 'value': ''