# ILLUMINA FUNCTIONS # # usage: biochem_utils.py fcnum ilmnDeblock elif method == 'ilmnDeblock': biochem.runILMNDeblock(int(sys.argv[1]), sys.argv[3]) # usage: biochem_utils.py fcnum ilmnCycle elif method == 'ilmnCycle': biochem.runILMNCycle(int(sys.argv[1]), sys.argv[3]) # usage: biochem_utils.py fcnum illumina elif method == 'illumina': biochem.runILMNDeblock(int(sys.argv[1]), sys.argv[3]) biochem.runILMNCycle(int(sys.argv[1]), sys.argv[4]) # usage: biochem_utils.py fcnum ilmnHyb elif method == 'ilmnHyb': biochem.runILMNHyb(int(sys.argv[1]), sys.argv[3]) else: print '\nWARN\t ---\t-\t--> Error: not correct method ' + \ 'input!\nWARN\t ---\t-\t--> Double check method name ' + \ '(2nd argument)\n' sys.exit()