def classify(self, options): """Determine taxonomic classification of genomes.""" check_dir_exists(options.align_dir) make_sure_path_exists(options.out_dir) genomes = self._genomes_to_process(options.genome_dir, options.batchfile, options.extension) classify = Classify(options.cpus) classify.run(genomes, options.align_dir, options.out_dir, options.prefix, options.debug) self.logger.info('Done.')