def classify(self, options):
"""Determine taxonomic classification of genomes."""
check_dir_exists(options.align_dir)
make_sure_path_exists(options.out_dir)
genomes = self._genomes_to_process(options.genome_dir,
options.batchfile,
options.extension)
classify = Classify(options.cpus)
classify.run(genomes, options.align_dir, options.out_dir,
options.prefix, options.debug)
self.logger.info('Done.')
