def test_info_record(): adapter = Adapter( sequence='GAACTCCAGTCACNNNNN', where=BACK, max_error_rate=0.12, min_overlap=5, read_wildcards=False, adapter_wildcards=True, name="Foo") read = Sequence(name="abc", sequence='CCCCAGAACTACAGTCCCGGC') am = Match(astart=0, astop=17, rstart=5, rstop=21, matches=15, errors=2, front=None, adapter=adapter, read=read) print(am.get_info_record()) assert am.get_info_record() == ( "abc", 2, 5, 21, 'CCCCA', 'GAACTACAGTCCCGGC', '', 'Foo', '', '', '' )
def test_info_record():
adapter = Adapter(
sequence='GAACTCCAGTCACNNNNN',
where=BACK,
max_error_rate=0.12,
min_overlap=5,
read_wildcards=False,
adapter_wildcards=True,
name="Foo")
read = Sequence(name="abc", sequence='CCCCAGAACTACAGTCCCGGC')
am = Match(astart=0, astop=17, rstart=5, rstop=21, matches=15, errors=2, remove_before=False,
adapter=adapter, read=read)
assert am.get_info_record() == (
"abc",
2,
5,
21,
'CCCCA',
'GAACTACAGTCCCGGC',
'',
'Foo',
'',
'',
''
)
def test_issue_52(): adapter = Adapter( sequence='GAACTCCAGTCACNNNNN', where=BACK, max_error_rate=0.12, min_overlap=5, read_wildcards=False, adapter_wildcards=True) read = Sequence(name="abc", sequence='CCCCAGAACTACAGTCCCGGC') am = Match(astart=0, astop=17, rstart=5, rstop=21, matches=15, errors=2, front=None, adapter=adapter, read=read) assert am.wildcards() == 'GGC' """