def save_user_info(info):
time = datetime.datetime.now()
info['create_time'] = time
info['update_time'] = time
info['status'] = 'R' # 'R' means review
if len(info['password']) < 10:
return {'data': '', 'errcode': 3, 'msg': "密码设置过短，请设置为10位以上！"}
db = DBConn()
name_result = db.execute("select id, status from user_info where username='******'" % info.get('username'), get_all=False)
tel_result = db.execute("select id, status from user_info where tel='%s'" % info.get('tel'), get_all=False)
def fail_info(sql_result, check_type):
status = sql_result[1]
if status == 'R':
msg = '该{check_type}之前已经注册，但状态处于等待中，请使用其它{check_type}注册！'
elif status == 'Y':
msg = '注册失败：该{check_type}已经注册，请使用其它{check_type}！'
else:
msg = '注册失败：该{check_type}已经存在！'
return {'data': '', 'errcode': 2, 'msg': msg.format(check_type=check_type)}
if name_result:
ret = fail_info(name_result, '名字')
elif tel_result:
ret = fail_info(tel_result, '电话号码')
else:
db.insert('user_info', info)
ret = {'data': '', 'errcode': 0, 'msg': '注册成功：等待审核！'}
return ret
def get_manager_list():
db = DBConn()
cmd = "select username from user_info where role='manager'"
result = db.execute(cmd)
return [i[0] for i in result]
def get_one_project_data(project_number):
#select multiple tables
# why use project_id = spm.id: see save_info where data_info['project_id'] = int(project_id)
cmd = """select * from sample_project_master spm,
sample_species ss,
sample_type st,
dna_sample_sequencing_type dsst,
rna_sample_sequencing_type rsst,
sample_other other
where ss.project_id=spm.id and
st.project_id=spm.id and
dsst.project_id=spm.id and
rsst.project_id=spm.id and
other.project_id=spm.id and
spm.project_number='%s'""" % (project_number)
db = DBConn()
result = db.execute(cmd, get_all=False)
data = dict(result)
#dorp sample_info_detail table
'''
cmd = "select * from sample_info_detail where project_id=%s" % result['project_id']
table_data = []
results = db.execute(cmd)
for result in results:
table_data.append(dict(result))
data['table_data'] = table_data
'''
return data
def main():
'''
Application main entry point
'''
logger = logging.Logger('mainApp')
logger.setLevel(logging.INFO)
fh = logging.FileHandler('envo.log')
fmt = logging.Formatter('%(asctime)s - %(name)s - %(levelname)s - %(message)s')
fh.setFormatter(fmt)
logger.addHandler(fh)
logger.info('ENVOMUSE DELIVERY TOOL STARTED')
db_conn = DBConn()
db_conn.check() #prepare database
app=MainApp(conn=db_conn,session=requests.session())
app.title("ENVOMUSE交付工具")
app.minsize(825,600)
app.geometry("825x600")
app.configure(background="white")
app.rowconfigure(0,weight=1)
app.columnconfigure(0,weight=1)
app.mainloop()
def get_one_project_data(project_number):
cmd = """select * from sample_project_master spm,
sample_species ss,
sample_type st,
dna_sample_sequencing_type dsst,
rna_sample_sequencing_type rsst,
sample_other other
where ss.project_id=spm.id and
st.project_id=spm.id and
dsst.project_id=spm.id and
rsst.project_id=spm.id and
other.project_id=spm.id and
spm.project_number=%s""" % project_number
db = DBConn()
result = db.execute(cmd, get_all=False)
data = dict(result)
cmd = "select * from sample_info_detail where project_id=%s" % result['project_id']
table_data = []
results = db.execute(cmd)
for result in results:
table_data.append(dict(result))
data['table_data'] = table_data
return data
def get_manager_list():
db = DBConn()
cmd = "select username from user_info where role='manager'"
result = db.execute(cmd)
return [i[0] for i in result]
def get_user_role(username, password=''):
db = DBConn()
cmd = "select role from user_info where username='******'" % username
if password:
cmd += " and password='******'" % password
result = db.execute(cmd, get_all=False)
role = result[0] if result else ''
return role
def get_analysis_data(username, role, project_id):
if not project_id:
return {}
cmd = """select * from analysis_master where project_id=%s""" % project_id
db = DBConn()
result = db.execute(cmd, get_all=False)
return dict(result) if result else {}
def get_other_info(username):
db = DBConn()
if phone_check(username):
cmd = "select e_mail, tel, company, field, customer_name from user_info where tel='%s'" % username
else:
cmd = "select e_mail, tel, company, field, customer_name from user_info where username='******'" % username
result = db.execute(cmd, get_all=False)
return result if result else ('', '', '', '')
def get_sample_list_by_project(project_id):
sample_list = {}
db = DBConn()
cmd = "SELECT id_alias,sample_name FROM SEQ_SA_INFO.sample_info_detail where project_id=%s" % project_id
results = db.execute(cmd)
for result in results:
sample_list[result[0]] = result[1]
return sample_list
def get_other_info(username):
db = DBConn()
if phone_check(username):
cmd = "select e_mail, tel, company, field, customer_name from user_info where tel='%s'" % username
else:
cmd = "select e_mail, tel, company, field, customer_name from user_info where username='******'" % username
result = db.execute(cmd, get_all=False)
return result if result else ('', '', '', '')
def get_sample_table_data(project_id):
all_project_sample_data = []
db = DBConn()
cmd = "SELECT * FROM SEQ_SA_INFO.sample_table where project_id=%s" % project_id
results = db.execute(cmd)
for result in results:
all_project_sample_data.append(dict(result))
return all_project_sample_data
def get_project_number_list(username, user_role):
if user_role == 'manager':
cmd = "select concat(project_name, '-', project_number) from sample_project_master where project_leader='%s'" % username
elif user_role == 'user':
cmd = "select concat(project_name, '-', project_number) from sample_project_master where created_by='%s'" % username
db = DBConn()
results = db.execute(cmd)
return [i[0] for i in results]
def get_project_number_list(username, user_role):
if user_role == 'manager':
cmd = "select concat(project_name, '-', project_number) from sample_project_master where project_leader='%s'" % username
elif user_role == 'user':
cmd = "select concat(project_name, '-', project_number) from sample_project_master where created_by='%s'" % username
db = DBConn()
results = db.execute(cmd)
return [i[0] for i in results]
def get_detail_sample_data(project_number):
data = []
cmd = """SELECT d.* FROM sample_info_detail d, sample_project_master m
where m.id=d.project_id and m.project_number=%s""" % project_number
db = DBConn()
results = db.execute(cmd)
for result in results:
data.append(dict(result))
return data
def get_analysis_data(username, role, selected_project):
if not selected_project:
return {}
project_number = selected_project.split('-')[-1]
cmd = """select a.* from analysis_master a,sample_project_master s
where a.project_id=s.id and s.project_number=%s""" % project_number
db = DBConn()
result = db.execute(cmd, get_all=False)
return dict(result) if result else {}
def get_analysis_data(username, role, selected_project):
if not selected_project:
return {}
project_number = selected_project.split('-')[-1]
cmd = """select a.* from analysis_master a,sample_project_master s
where a.project_id=s.id and s.project_number=%s""" % project_number
db = DBConn()
result = db.execute(cmd, get_all=False)
return dict(result) if result else {}
def get_detail_sample_data(project_number):
data = []
cmd = """SELECT d.* FROM sample_project_master m
where m.id=d.project_id and m.project_number='%s'""" % project_number
db = DBConn()
results = db.execute(cmd)
for result in results:
data.append(dict(result))
return data
def save_user_info(info):
time = datetime.datetime.now()
info['create_time'] = time
info['update_time'] = time
db = DBConn()
result = db.execute("select id from user_info where username='******'" % info.get('username'), get_all=False)
if not result:
db.insert('user_info', info)
return {'data': '', 'errcode': 0, 'msg': 'SUCCESS'}
else:
return {'data': '', 'errcode': 2, 'msg': '注册失败：该用户已经注册，请使用其它名字！'}
def get_user_role(username, password=''):
db = DBConn()
if phone_check(username):
cmd = "select role,status from user_info where tel='%s'" % username
else:
cmd = "select role,status from user_info where username='******'" % username
if password:
cmd += " and password='******'" % password
result = db.execute(cmd, get_all=False)
role = result[0] if result else ''
status = result[1] if result else ''
return role, status
def get_user_role(username, password=''):
db = DBConn()
if phone_check(username):
cmd = "select role,status from user_info where tel='%s'" % username
else:
cmd = "select role,status from user_info where username='******'" % username
if password:
cmd += " and password='******'" % password
result = db.execute(cmd, get_all=False)
role = result[0] if result else ''
status = result[1] if result else ''
return role, status
def modify_base_info(info):
time = datetime.datetime.now()
info['update_time'] = time
username = info.get('username')
tel = info.get('tel')
db = DBConn()
cmd = "select id from user_info where username!='%s' and tel='%s'" % (username, tel)
check_result = db.execute(cmd, get_all=False)
if check_result:
return {'data': '', 'errcode': 1, 'msg': '该电话号码已经被其它用户注册，请使用其它号码！'}
else:
db.update('user_info', {'username': username}, info)
return {'data': '', 'errcode': 0, 'msg': '更新成功！'}
def get_project_number_list(username, user_role):
if user_role == 'manager':
cmd = "select id, concat(project_name, '-', project_number) from sample_project_master where project_leader='%s'" % username
elif user_role == 'user':
cmd = "select id, concat(project_name, '-', project_number) from sample_project_master where created_by='%s'" % username
db = DBConn()
results = db.execute(cmd)
data = {}
for result in results:
data[result[0]] = result[1]
return data
def get_analysis_table_data(project_id):
data = {}
db = DBConn()
cmd = """select info.* from sample_packet_information info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['sample_packet_information'] = [dict(i) for i in results]
cmd = """select info.* from compare_table info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['compare_table'] = [dict(i) for i in results]
return data
def save_simple_data(project_id, data):
try:
table_name = "sample_table"
db = DBConn()
db.delete(table_name, {'project_id': project_id})
for row in data:
row['project_id'] = project_id
db.insert(table_name, row)
ret = {'data': '', 'errcode': 0, 'msg': ''}
except Exception, e:
import traceback
traceback.print_exc()
ret = {'data': '', 'errcode': 1, 'msg': '%s DB issue!' % e}
def modify_base_info(info):
time = datetime.datetime.now()
info['update_time'] = time
username = info.get('username')
tel = info.get('tel')
db = DBConn()
cmd = "select id from user_info where username!='%s' and tel='%s'" % (
username, tel)
check_result = db.execute(cmd, get_all=False)
if check_result:
return {'data': '', 'errcode': 1, 'msg': '该电话号码已经被其它用户注册，请使用其它号码！'}
else:
db.update('user_info', {'username': username}, info)
return {'data': '', 'errcode': 0, 'msg': '更新成功！'}
def main():
logger = logging.getLogger('')
handler = logging.handlers.WatchedFileHandler('/var/log/cfmrda.qrz.log')
handler.setFormatter(logging.Formatter(\
'%(asctime)s %(name)-12s %(levelname)-8s %(message)s'))
logger.setLevel(logging.DEBUG)
logger.addHandler(handler)
handler.setLevel(logging.DEBUG)
conf = site_conf()
_db = DBConn(conf.items('db'))
yield from _db.connect()
qrzru = QRZRuLink(asyncio.get_event_loop())
pfx = Pfx('/usr/local/webcluster/cty.dat')
@asyncio.coroutine
def db_write(data):
yield from _db.execute(
"""
insert into callsigns_rda (callsign, source, rda)
values (%(callsign)s, 'QRZ.ru', %(rda)s)""", data)
callsigns = yield from _db.execute(\
"""select distinct hunter from rda_hunter""")
logging.debug('callsigns list received -- ' + str(len(callsigns)))
params = []
cnt = 0
ru_cnt = 0
fnd_cnt = 0
for _cs in callsigns:
cnt += 1
cs_pfx = pfx.get(_cs)
if cs_pfx in ['R', 'R2F', 'R9']:
m_special = RE_SPECIAL.search(_cs)
if m_special:
continue
ru_cnt += 1
data = yield from qrzru.query(_cs)
if data and 'state' in data and data['state']:
fnd_cnt += 1
params.append({'callsign': _cs, 'rda': data['state']})
logging.debug(_cs + ' found')
if len(params) >= 100:
yield from db_write(params)
params = []
logging.debug('Processed ' + str(cnt) + '/' + str(ru_cnt) + '/'\
+ str(fnd_cnt) + ' of ' + str(len(callsigns)))
cnt += 1
logging.debug('qrz query complete')
def db_setup():
'''
PURPOSE:
Using the db.DBConn() class, this method is used to create the
avatardata database table, if the table does not already exist.
'''
global DBC
#CREATE DB INSTANCE
DBC = DBConn('db_config.json')
#ENSURE TABLE(S) IS/ARE CREATES
DBC.create()
def get_analysis_table_data(username, selected_project):
data = {}
db = DBConn()
project_number = selected_project.split('-')[-1]
project_id = get_project_id_by_num(db, project_number)
cmd = """select info.* from sample_packet_information info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['sample_packet_information'] = [dict(i) for i in results]
cmd = """select info.* from compare_table info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['compare_table'] = [dict(i) for i in results]
return data
def change_password(info):
username = info['username']
db = DBConn()
cmd = "select password from user_info where username='******'" % username
result = db.execute(cmd, get_all=False)
if result and result[0] == info['old_passwd'] and info['new_passwd'] != info['old_passwd']:
db.update('user_info', {'username': username}, {'password': info['new_passwd'],
'update_time': datetime.datetime.now()})
return {'data': '', 'errcode': 0, 'msg': '更新成功！'}
elif result and result[0] != info['old_passwd']:
return {'data': '', 'errcode': 1, 'msg': '旧密码错误！'}
elif info['new_passwd'] == info['old_passwd']:
return {'data': '', 'errcode': 1, 'msg': '新密码和旧密码不能一样！'}
else:
return {'data': '', 'errcode': 1, 'msg': '用户名不存在！'}
def get_analysis_table_data(username, selected_project):
data = {}
db = DBConn()
project_number = selected_project.split('-')[-1]
project_id = get_project_id_by_num(db, project_number)
cmd = """select info.* from sample_packet_information info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['sample_packet_information'] = [dict(i) for i in results]
cmd = """select info.* from compare_table info, analysis_master m
where m.id=info.master_id and m.project_id=%s""" % project_id
results = db.execute(cmd)
data['compare_table'] = [dict(i) for i in results]
return data
def export_rankings(conf):
"""rebuild rankings table in db and export top100 to json file for web"""
logging.debug('export rankings')
_db = DBConn(conf.items('db'))
yield from _db.connect()
yield from _db.execute("select from build_rankings()")
logging.debug('rankings table rebuilt')
rankings = yield from _db.execute(
"""
select rankings_json('_rank < 104') as data
""", None, False)
save_json(rankings, conf.get('web', 'root') + '/json/rankings.json')
logging.debug('export rankings finished')
def upper(self):
sql_get = 'SELECT id,suburb FROM overall_sold_history_increment WHERE id<=1000'
sql_update = 'UPDATE overall_sold_history_increment SET suburb=\'%s\' WHERE id=%s'
with DBConn() as db:
history = db.fetchall(sql_get)
for item in history:
db.execute(sql_update % (item[1].upper(), item[0]))
def get_all_user_data():
data = []
cmd = "select username,e_mail email,tel,company,age,role,field,status,notes from user_info"
results = DBConn().execute(cmd)
for result in results:
data.append(dict(result))
return data
def show_all_data(username, role='user'):
data = []
cmd = """select project_number,project_name,cust_organization,cust_user,status,create_time
from sample_project_master spm where
"""
if role == 'manager':
cmd += "spm.project_leader='%s'" % username
elif role == 'user':
cmd += "spm.created_by='%s'" % username
db = DBConn()
result = db.execute(cmd)
for i in result:
temp_dict = dict(i)
data.append(temp_dict)
return data
def main():
logger = logging.getLogger('')
logger.setLevel(logging.DEBUG)
conf = site_conf()
_db = DBConn(conf.items('db'))
yield from _db.connect()
yield from _db.execute('delete from old_rda;')
yield from _db.execute('delete from rda;')
rda_rus = requests.get('http://rdaward.org/rda_rus.txt').text
params_old = []
params = []
lines = rda_rus.split('\r\n')
re_rda_line = re.compile(
r'(^[A-Z][A-Z]-\d\d)\s+[^\t]+\t*([A-Z][A-Z]-\d\d|\*\*\*)?')
for line in lines:
match_rda_line = re_rda_line.match(line)
if match_rda_line:
if match_rda_line.group(2):
old = match_rda_line.group(1)
new = None if match_rda_line.group(
2) == '***' else match_rda_line.group(2)
params_old.append({'old': old, 'new': new})
else:
params.append({'rda': match_rda_line.group(1)})
yield from _db.execute("""insert into old_rda
values (%(old)s, %(new)s)""",\
params_old, progress=True)
yield from _db.execute("""insert into rda
values (%(rda)s)""",\
params, progress=True)
def main():
logger = logging.getLogger('')
logger.setLevel(logging.DEBUG)
conf = site_conf()
_db = DBConn(conf.items('db'))
yield from _db.connect()
with open('/var/www/adxc.test/csv/rda_old_new.csv', 'r') as f_data:
params = []
for line in f_data.readlines():
fields = {}
fields['old'], fields['new'] = line.strip().split(';')
if fields['old'] and fields['new']:
params.append(fields)
yield from _db.execute("""insert into old_rda
values (%(old)s, %(new)s)""",\
params, progress=True)
def change_password(info):
username = info['username']
db = DBConn()
cmd = "select password from user_info where username='******'" % username
result = db.execute(cmd, get_all=False)
if result and result[0] == info[
'old_passwd'] and info['new_passwd'] != info['old_passwd']:
db.update('user_info', {'username': username}, {
'password': info['new_passwd'],
'update_time': datetime.datetime.now()
})
return {'data': '', 'errcode': 0, 'msg': '更新成功！'}
elif result and result[0] != info['old_passwd']:
return {'data': '', 'errcode': 1, 'msg': '旧密码错误！'}
elif info['new_passwd'] == info['old_passwd']:
return {'data': '', 'errcode': 1, 'msg': '新密码和旧密码不能一样！'}
else:
return {'data': '', 'errcode': 1, 'msg': '用户名不存在！'}
def save_info(all_info, username, action='new'):
db_instance = DBConn()
try:
project_id = save_sample_project_master_info(
db_instance, all_info.get('sample_project_master_info'), username,
action)
except Exception, e:
print e
return {'data': '', 'errcode': 1, 'msg': '保存失败！项目编号已经存在，请另外选择项目编号。'}
def export_msc(conf):
"""export misc db data to json file for web"""
logging.debug('export misc')
_db = DBConn(conf.items('db'))
yield from _db.connect()
data = {}
data['qsoCount'] = (yield from _db.execute(
"""
select count(*) as qso_count
from qso;
""", None, False))
data['userActivity'] = (yield from _db.execute(
"""
select json_agg(data) from
(select json_build_object('callsign',
coalesce(qsl_wait.callsign, qsl_today.callsign, email.callsign),
'qslWait', qsl_wait, 'qslToday', qsl_today,
'email', email) as data
from
(select user_cs as callsign, count(*) as qsl_wait
from cfm_qsl_qso
where state is null
group by user_cs) as qsl_wait
full join
(select user_cs as callsign, count(*) as qsl_today
from cfm_qsl_qso
where state
group by user_cs) as qsl_today
on qsl_wait.callsign = qsl_today.callsign
full join
(select user_cs as callsign, count(*) as email
from cfm_request_qso
where not sent and user_cs is not null
group by user_cs) as email
on coalesce(qsl_wait.callsign, qsl_today.callsign) = email.callsign
order by coalesce(qsl_wait.callsign, qsl_today.callsign,
email.callsign)
) as data""", None, False))
save_json(data, conf.get('web', 'root') + '/json/msc.json')
logging.debug('export misc finished')
def export_table_info(table_name, project_id, title_list):
book = Workbook()
sheet1 = book.worksheets[0]
#connect database:
db = DBConn()
cmd = "select * from {table_name} where project_id = '{project_id}'".format(
table_name=table_name, project_id=project_id)
results = db.execute(cmd)
for i, title in enumerate(title_list):
sheet1.cell(row=1, column=i + 1).value = title
for i, result in enumerate(results):
for j, title in enumerate(title_list):
sheet1.cell(row=i + 2,
column=j + 1).value = result.get(header_map[title])
export_path = os.path.dirname(__file__) + '/static/export/'
file_name = table_name + '_' + project_id + '_' + datetime.datetime.now(
).strftime("%Y%m%d%H%M%S") + '.xls'
full_path_name = os.path.join(export_path, file_name)
book.save(filename=full_path_name)
return file_name
def export_recent_uploads(conf):
"""export 20 recent uploaded file batches to json file for web"""
logging.debug('export recent uploads')
_db = DBConn(conf.items('db'))
yield from _db.connect()
data = yield from _db.execute(
"""
select json_agg(json_build_object(
'activators', activators,
'rda', rda,
'uploadDate', to_char(max_tstamp, 'DD mon YYYY'),
'uploadTime', to_char(max_tstamp, 'HH24:MI'),
'uploadType', upload_type,
'uploader', uploader)) as data
from
(select user_cs as uploader, upload_type,
max(tstamp) as max_tstamp,
array_agg(id) as ids
from uploads
where ext_logger_id is null
group by date(tstamp), user_cs, upload_type
order by max_tstamp desc
limit 20) as ru,
lateral
(select array_agg(distinct station_callsign) as activators
from qso
where upload_id = any(ids)) as acts,
lateral
(select array_agg(rda) as rda
from
(select json_build_object('rda', array_agg(distinct rda),
'id', upload_id) as rda
from qso
where upload_id = any(ids)
group by upload_id) as rdas0) as rdas
""", None, False)
save_json(data, conf.get('web', 'root') + '/json/recent_uploads.json')
logging.debug('export recent uploads finished')
def show_all_data(username, role='user'):
data = []
cmd = """select * from sample_project_master spm,
sample_species ss,
sample_type st,
dna_sample_sequencing_type dsst,
rna_sample_sequencing_type rsst
where ss.project_id=spm.id and
st.project_id=spm.id and
dsst.project_id=spm.id and
rsst.project_id=spm.id"""
if role == 'manager':
cmd += " and spm.project_leader='%s'" % username
elif role == 'user':
cmd += " and spm.created_by='%s'" % username
db = DBConn()
result = db.execute(cmd)
for i in result:
data.append(dict(i))
return data
def export_stat(conf):
"""export statistic data to json file for web"""
logging.debug('export stats')
_db = DBConn(conf.items('db'))
yield from _db.connect()
data = {}
data['qso by rda'] = (yield from _db.execute(
"""
select json_object_agg(rda, data) as data from
(select rda, json_object_agg(band, data) as data from
(select rda, band, json_object_agg(mode, qso_count) as data from
(select count(*) as qso_count, rda, band, mode
from qso
where upload_id is null or
(select enabled from uploads
where id=upload_id)
group by mode, band, rda
) as q0
group by rda, band) as q1
group by rda) as q2
""", None, False))
for rda_data in data['qso by rda'].values():
rda_total = {'total': 0}
for band_data in rda_data.values():
band_total = 0
for mode, qso_count in band_data.items():
band_total += qso_count
if mode not in rda_total:
rda_total[mode] = 0
rda_total[mode] += qso_count
band_data['total'] = band_total
rda_total['total'] += band_total
rda_data['total'] = rda_total
save_json(data, conf.get('web', 'root') + '/json/stat.json')
logging.debug('export stats finished')
def save_compare_text(project_id, all_info, current_time):
try:
db = DBConn()
result = db.execute("select project_name from sample_project_master where id=%s" % project_id, get_all=False)
project_name = result[0]
project_dir = os.path.join(os.path.dirname(__file__), 'static/export/' + project_name)
if not os.path.exists(project_dir):
os.mkdir(project_dir)
group_file_name = os.path.join(project_dir, 'sample_inf' + current_time + '.txt')
compare_file_name = os.path.join(project_dir, 'group_compare' + current_time + '.txt')
sample_packet_information = all_info['sample_packet_information']
compare_table = all_info['compare_table']
fd_group_file = open(group_file_name, 'w+')
fd_compare_file = open(compare_file_name, 'w+')
fd_group_file.write(all_info['reference_genome'] + '\n')
for row in sample_packet_information:
fd_group_file.write(row['sample_group'] + '\t' + row['sample_name'] + '\n')
for row in compare_table:
fd_compare_file.write(row['comparison_name'] + '\t' + row['sample_group1'] + '\t' + row['sample_group2'] + '\n')
fd_group_file.close()
fd_compare_file.close()
except Exception, e:
print e
def distct_history(self):
sql_startid = 'SELECT MIN(id) FROM %s WHERE processed_date IS NULL'
sql_getid = 'SELECT id FROM %s WHERE id NOT IN (SELECT MIN(id) FROM overall_sold_history_increment GROUP BY url) AND id>=%s'
sql_delete = 'DELETE FROM %s WHERE id=%s'
sql_date = 'UPDATE %s SET processed_date=\'%s\' WHERE processed_date IS NULL'
current_date = datetime.datetime.now().strftime('%Y-%m-%d')
with DBConn() as db:
startid = db.fetchall(sql_startid % TB_INCREM)[0][0]
if startid != None:
id_set = db.fetchall(sql_getid % (TB_INCREM, startid))
for id in id_set:
db.execute(sql_delete % (TB_INCREM, id[0]))
print('[*]Deleting id=%s' % id[0])
db.execute(sql_date % (TB_INCREM, current_date))
else:
print('[*]No new record is found.')
def post(self):
try:
# reads request
parser = reqparse.RequestParser()
parser.add_argument('data', type=str)
args = parser.parse_args()
_userData = json.loads(args['data'])
pprint(_userData)
# parsing to commit db
_userMagnetic = _userData['Magnetic']
_userWifiInfo = _userData['WifiInfo']
sampleMagnetic = dict()
sampleMagnetic[u'x'] = _userMagnetic[0]
sampleMagnetic[u'y'] = _userMagnetic[1]
sampleMagnetic[u'z'] = _userMagnetic[2]
sampleWifi = dict()
for i, data in enumerate(_userWifiInfo):
sampleWifi[str(i)] = data
pprint(sampleMagnetic)
pprint(sampleWifi)
# commit db
point = DBConn.Point(x=1,
y=1,
magnetic=sampleMagnetic,
wifiscan=sampleWifi)
db.setData('it2', point.to_dict())
pprint('done')
return {"status": "success"}
'''
return {
'Email': _userEmail,
'UserName': _userName,
'Password': _userPassword
}
'''
except Exception as e:
return {'error': str(e)}
def post(self):
try:
# reads request
parser = reqparse.RequestParser()
parser.add_argument('data', type=str)
args = parser.parse_args()
_userData = json.loads(args['data'])
pprint(_userData)
# print("data,", request.data) # read all payload
# print("get_data(),", request.get_data()) # read data
# print("get_json(),", request.get_json()) # read only json
# print("stream.read(),", request.stream.read())
# parsing to commit db
_userMagnetic = _userData['Magnetic']
_userWifiInfo = _userData['WifiInfo']
_userX = _userData['x']
_userY = _userData['y']
sampleMagnetic = dict()
sampleMagnetic[u'x'] = _userMagnetic[0]
sampleMagnetic[u'y'] = _userMagnetic[1]
sampleMagnetic[u'z'] = _userMagnetic[2]
sampleWifi = dict()
for i, data in enumerate(_userWifiInfo):
sampleWifi[str(i)] = data
pprint(sampleMagnetic)
pprint(sampleWifi)
# commit db
point = DBConn.Point(x=_userX,
y=_userY,
magnetic=sampleMagnetic,
wifiscan=sampleWifi)
db.setData('it5', point.to_dict())
pprint('done')
return {"status": "success"}
except Exception as e:
print("Error:", str(e))
return {'error': str(e)}
def add_subid(self, *, date=None):
dbwrapper = DBWrapper()
if date != None:
date_format = re.compile(r'(\d{4})\-(\d{1,2})\-(\d{1,2})')
date_YMD = date_format.match(date).groups()
date_YMD = list(map(int, date_YMD))
if len(date_YMD) != 3:
print(
'[!]Eror: Optional param of add_subid requires a string like \'2017-1-1\''
)
raise TypeError
if date_YMD[0] > 1900 and date_YMD[1] <= 12 and date_YMD[
2] <= 31 and date_YMD[1] > 0 and date_YMD[2] > 0:
pass
else:
print(
'[!]Eror: Optional param of add_subid requires a string like \'2017-1-1\''
)
raise ValueError
else:
sql_latestdate = 'SELECT MAX(update_date) FROM %s' % TB_INCREM
latest_date = dbwrapper.db_fetchall(sql_latestdate)
date = latest_date[0][0].strftime('%Y-%m-%d')
sql_gethistory = 'SELECT id,state,postcode,suburb FROM %s WHERE suburb_id is NULL AND update_date=\'%s\''
latest_history = dbwrapper.db_fetchall(sql_gethistory %
(TB_INCREM, date))
sql_getsubid = 'SELECT id FROM %s WHERE state=\'%s\' AND postcode=\'%s\' AND suburb=\'%s\''
sql_updatesubid = 'UPDATE %s SET suburb_id=%s WHERE id=%s'
with DBConn() as db:
for item in latest_history:
suburb_id = db.fetchall(
sql_getsubid % (TB_POSTCODES, item[1], item[2], item[3]))
print('[*]id=%s, state=%s, postcode=%s, suburb=%s' %
(item[0], item[1], item[2], item[3]))
if len(suburb_id) != 1 or len(suburb_id[0]) != 1:
print(
'[*]Error: Fetch suburb_id failed: id=%s, state=%s, postcode=%s, suburb=%s'
% (item[0], item[1], item[2], item[3]))
else:
suburb_id = suburb_id[0][0]
db.execute(sql_updatesubid %
(TB_INCREM, suburb_id, item[0]))
def save_user_info(info):
time = datetime.datetime.now()
info['create_time'] = time
info['update_time'] = time
info['status'] = 'R' # 'R' means review
if len(info['password']) < 10:
return {'data': '', 'errcode': 3, 'msg': "密码设置过短，请设置为10位以上！"}
db = DBConn()
name_result = db.execute(
"select id, status from user_info where username='******'" %
info.get('username'),
get_all=False)
tel_result = db.execute("select id, status from user_info where tel='%s'" %
info.get('tel'),
get_all=False)
def fail_info(sql_result, check_type):
status = sql_result[1]
if status == 'R':
msg = '该{check_type}之前已经注册，但状态处于等待中，请使用其它{check_type}注册！'
elif status == 'Y':
msg = '注册失败：该{check_type}已经注册，请使用其它{check_type}！'
else:
msg = '注册失败：该{check_type}已经存在！'
return {
'data': '',
'errcode': 2,
'msg': msg.format(check_type=check_type)
}
if name_result:
ret = fail_info(name_result, '名字')
elif tel_result:
ret = fail_info(tel_result, '电话号码')
else:
db.insert('user_info', info)
ret = {'data': '', 'errcode': 0, 'msg': '注册成功：等待审核！'}
return ret
class ImgLoader:
def __init__(self, db_conf):
self.db = DBConn(db_conf['host'], db_conf['user'], db_conf['pwd'],
db_conf['db'])
def load_tasks(self, count):
# slow
#sql = 'select id, content from documents where id not in (select id from thumb) order by updated_at desc limit %d' % count
sql = 'select id, content from documents where thumb_status = 1 order by updated_at desc limit %d' % count
rets = self.db.execute_short(sql)
if not rets: return None
tasks = []
for rec in rets:
url = self._get_image_url(rec['content'])
if not url:
self.on_done({'id': rec['id']}, None, 2)
continue
tasks.append({'id': rec['id'], 'url': url})
return tasks
def on_done(self, task, data, status=3):
sql = 'insert into thumb(id, data) values (%s, %s)'
if not self._thumb_exist(task['id']):
self.db.update(sql, (task['id'], data if data else None))
self._update_doc_status(task['id'], 0 if data else status)
def _update_doc_status(self, id, status):
sql = 'update documents set thumb_status = %s where id = %s'
print('update doc set status: %d: %s' % (id, status))
self.db.update(sql, (status, id))
def _thumb_exist(self, id):
sql = 'select id from thumb where id=%d' % int(id)
return self.db.execute_short(sql)
def _get_image_url(self, content):
if not content: return ''
soup = BeautifulSoup(content)
imgs = soup.find('img')
return imgs.get('src') if imgs else ''
#!/usr/bin/python3
#coding=utf-8
import json
from db import DBConn
from conf import CONF
DB = DBConn(CONF.items('db'))
DB.connect()
feeders_data = DB.execute("""
select id, props
from devices
where device_type_id = 3""")
for feeder_data in feeders_data:
for timer in feeder_data['props'][2]:
timer.append(0)
feeder_data['props'] = json.dumps(feeder_data['props'])
DB.execute(
"""
update devices
set props = %(props)s
where id = %(id)s""", feeder_data)
def admin_save_user_info(username, status):
db = DBConn()
db.update('user_info', {'username': username}, {'status': status})
def get_project_info(project_id):
db = DBConn()
cmd = "SELECT project_name, project_number FROM sample_project_master where id=%s" % project_id
result = db.execute(cmd, get_all=False)
return dict(result)
def save_compare_input(all_info, username, project_id, action='new'):
current_time = datetime.datetime.now()
save_compare_text(project_id, all_info, str(current_time))
db_instance = DBConn()
project_log = get_project_log_by_num(db_instance, project_id)
all_info['project_id'] = project_id
cmd = "select id from analysis_master where created_by='%s' and project_id=%s" % (username, project_id)
result = db_instance.execute(cmd, get_all=False)
if result:
action = 'update'
master_id = result[0]
db_instance.delete('sample_packet_information', {'master_id': master_id})
db_instance.delete('compare_table', {'master_id': master_id})
sample_packet_information = all_info['sample_packet_information']
compare_table = all_info['compare_table']
del all_info['sample_packet_information']
del all_info['compare_table']
all_info['updated_by'] = username
all_info['update_time'] = current_time
if action == 'new':
all_info['create_time'] = current_time
all_info['created_by'] = username
master_id = db_instance.insert('analysis_master', all_info)
project_log += '\n%s: %s created compare method.\n' % (current_time, username)
db_instance.update('sample_project_master', {'id': project_id}, {'project_log': project_log})
else:
project_log += '\n%s: %s update compare method.\n' % (current_time, username)
db_instance.update('sample_project_master', {'id': project_id}, {'project_log': project_log})
db_instance.update('analysis_master', {'id': master_id}, all_info)
for row in sample_packet_information:
del row['id']
row['master_id'] = master_id
db_instance.insert('sample_packet_information', row)
for row in compare_table:
del row['id']
row['master_id'] = master_id
db_instance.insert('compare_table', row)
msg = '更新成功！' if action == 'update' else '保存成功!'
return {'data': '', 'errcode': 0, 'msg': msg}
def save_compare_input(all_info, username, selected_project, action='new'):
time = datetime.datetime.now()
db_instance = DBConn()
project_number = selected_project.split('-')[-1]
project_id = get_project_id_by_num(db_instance, project_number)
all_info['project_id'] = project_id
cmd = "select id from analysis_master where created_by='%s' and project_id=%s" % (username, project_id)
result = db_instance.execute(cmd, get_all=False)
if result:
action = 'update'
master_id = result[0]
db_instance.delete('sample_packet_information', {'master_id': master_id})
db_instance.delete('compare_table', {'master_id': master_id})
sample_packet_information = all_info['sample_packet_information']
compare_table = all_info['compare_table']
del all_info['sample_packet_information']
del all_info['compare_table']
all_info['updated_by'] = username
all_info['update_time'] = time
if action == 'new':
all_info['create_time'] = time
all_info['created_by'] = username
master_id = db_instance.insert('analysis_master', all_info)
else:
db_instance.update('analysis_master', {'id': master_id}, all_info)
for row in sample_packet_information:
del row['id']
row['master_id'] = master_id
db_instance.insert('sample_packet_information', row)
for row in compare_table:
del row['id']
row['master_id'] = master_id
db_instance.insert('compare_table', row)
save_compare_text(selected_project, compare_table)
msg = '更新成功！' if action == 'update' else '保存成功!'
return {'data': '', 'errcode': 0, 'msg': msg}
def save_status(project_number, status):
db = DBConn()
db.update('sample_project_master', {'project_number': project_number}, {'status': status})