def from_observations(datablock, params=None):
'''
Construct a reflection table from observations.
:param datablock: The datablock
:param params: The input parameters
:return: The reflection table of observations
'''
from dials.algorithms.spot_finding.factory \
import SpotFinderFactory
from libtbx import Auto
if params is None:
from dials.command_line.find_spots import phil_scope
from dials.util.phil import parse
params = phil_scope.fetch(source=parse("")).extract()
if params.spotfinder.filter.min_spot_size is Auto:
detector = datablock.extract_imagesets()[0].get_detector()
if detector[0].get_type() == 'SENSOR_PAD':
# smaller default value for pixel array detectors
params.spotfinder.filter.min_spot_size = 3
else:
params.spotfinder.filter.min_spot_size = 6
logger.info('Setting spotfinder.filter.min_spot_size=%i' %
(params.spotfinder.filter.min_spot_size))
# Get the integrator from the input parameters
logger.info('Configuring spot finder from input parameters')
find_spots = SpotFinderFactory.from_parameters(datablock=datablock,
params=params)
# Find the spots
return find_spots(datablock)
def from_observations(datablock, params=None):
'''
Construct a reflection table from observations.
:param datablock: The datablock
:param params: The input parameters
:return: The reflection table of observations
'''
from dials.algorithms.spot_finding.factory \
import SpotFinderFactory
from logging import info
from libtbx import Auto
if params.spotfinder.filter.min_spot_size is Auto:
detector = datablock.extract_imagesets()[0].get_detector()
if detector[0].get_type() == 'SENSOR_PAD':
# smaller default value for pixel array detectors
params.spotfinder.filter.min_spot_size = 3
else:
params.spotfinder.filter.min_spot_size = 6
info('Setting spotfinder.filter.min_spot_size=%i' %(
params.spotfinder.filter.min_spot_size))
# Get the integrator from the input parameters
info('Configuring spot finder from input parameters')
find_spots = SpotFinderFactory.from_parameters(params)
# Find the spots
return find_spots(datablock)
def from_observations(experiments, params=None):
"""
Construct a reflection table from observations.
:param experiments: The experiments
:param params: The input parameters
:return: The reflection table of observations
"""
from dials.algorithms.spot_finding.factory import SpotFinderFactory
if params is None:
from dials.command_line.find_spots import phil_scope
from dials.util.phil import parse
params = phil_scope.fetch(source=parse("")).extract()
if params.spotfinder.filter.min_spot_size is libtbx.Auto:
detector = experiments[0].imageset.get_detector()
if detector[0].get_type() == "SENSOR_PAD":
# smaller default value for pixel array detectors
params.spotfinder.filter.min_spot_size = 3
else:
params.spotfinder.filter.min_spot_size = 6
logger.info(
"Setting spotfinder.filter.min_spot_size=%i",
params.spotfinder.filter.min_spot_size,
)
# Get the integrator from the input parameters
logger.info("Configuring spot finder from input parameters")
find_spots = SpotFinderFactory.from_parameters(
experiments=experiments, params=params
)
# Find the spots
return find_spots(experiments)
