def from_observations(datablock, params=None): ''' Construct a reflection table from observations. :param datablock: The datablock :param params: The input parameters :return: The reflection table of observations ''' from dials.algorithms.spot_finding.factory \ import SpotFinderFactory from libtbx import Auto if params is None: from dials.command_line.find_spots import phil_scope from dials.util.phil import parse params = phil_scope.fetch(source=parse("")).extract() if params.spotfinder.filter.min_spot_size is Auto: detector = datablock.extract_imagesets()[0].get_detector() if detector[0].get_type() == 'SENSOR_PAD': # smaller default value for pixel array detectors params.spotfinder.filter.min_spot_size = 3 else: params.spotfinder.filter.min_spot_size = 6 logger.info('Setting spotfinder.filter.min_spot_size=%i' % (params.spotfinder.filter.min_spot_size)) # Get the integrator from the input parameters logger.info('Configuring spot finder from input parameters') find_spots = SpotFinderFactory.from_parameters(datablock=datablock, params=params) # Find the spots return find_spots(datablock)
def from_observations(datablock, params=None): ''' Construct a reflection table from observations. :param datablock: The datablock :param params: The input parameters :return: The reflection table of observations ''' from dials.algorithms.spot_finding.factory \ import SpotFinderFactory from logging import info from libtbx import Auto if params.spotfinder.filter.min_spot_size is Auto: detector = datablock.extract_imagesets()[0].get_detector() if detector[0].get_type() == 'SENSOR_PAD': # smaller default value for pixel array detectors params.spotfinder.filter.min_spot_size = 3 else: params.spotfinder.filter.min_spot_size = 6 info('Setting spotfinder.filter.min_spot_size=%i' %( params.spotfinder.filter.min_spot_size)) # Get the integrator from the input parameters info('Configuring spot finder from input parameters') find_spots = SpotFinderFactory.from_parameters(params) # Find the spots return find_spots(datablock)
def from_observations(experiments, params=None): """ Construct a reflection table from observations. :param experiments: The experiments :param params: The input parameters :return: The reflection table of observations """ from dials.algorithms.spot_finding.factory import SpotFinderFactory if params is None: from dials.command_line.find_spots import phil_scope from dials.util.phil import parse params = phil_scope.fetch(source=parse("")).extract() if params.spotfinder.filter.min_spot_size is libtbx.Auto: detector = experiments[0].imageset.get_detector() if detector[0].get_type() == "SENSOR_PAD": # smaller default value for pixel array detectors params.spotfinder.filter.min_spot_size = 3 else: params.spotfinder.filter.min_spot_size = 6 logger.info( "Setting spotfinder.filter.min_spot_size=%i", params.spotfinder.filter.min_spot_size, ) # Get the integrator from the input parameters logger.info("Configuring spot finder from input parameters") find_spots = SpotFinderFactory.from_parameters( experiments=experiments, params=params ) # Find the spots return find_spots(experiments)