Python get_gene_ids Exemples

Exemple #1

Fichier : test_symbol.py Projet : mattdoug604/ensembl_map

 def test_gene_ids_from_protein(self):
     ret_by_id = get_gene_ids("ENSP00000288135", "protein")
     self.assertTrue("ENSG00000157404" in ret_by_id)

Exemple #2

Fichier : test_symbol.py Projet : mattdoug604/ensembl_map

 def test_gene_ids_from_exon(self):
     ret_by_id = get_gene_ids("ENSE00001074448", "exon")
     self.assertTrue("ENSG00000157404" in ret_by_id)

Exemple #3

Fichier : test_symbol.py Projet : mattdoug604/ensembl_map

 def test_gene_ids_from_gene(self):
     ret_by_id = get_gene_ids("ENSG00000157404", "gene")
     ret_by_name = get_gene_ids("KIT", "gene")
     self.assertTrue("ENSG00000157404" in ret_by_id)
     self.assertTrue("ENSG00000157404" in ret_by_name)
     self.assertEqual(ret_by_id, ret_by_name)

Exemple #4

Fichier : test_symbol.py Projet : mattdoug604/ensembl_map

 def test_gene_ids_from_cds(self):
     ret_by_id = get_gene_ids("ENST00000288135", "cds")
     ret_by_name = get_gene_ids("KIT-201", "cds")
     self.assertTrue("ENSG00000157404" in ret_by_id)
     self.assertTrue("ENSG00000157404" in ret_by_name)
     self.assertEqual(ret_by_id, ret_by_name)