def addpaper( idx, citation ):
start=time.time()
print(citation)
if citation is None:
return
print('trying to add {} number {}'.format(citation[5], idx))
site = pywikibot.Site("librarybase", "librarybase")
item = librarybase.JournalArticlePage(site)
pmcidobj = getPMCID(citation[5])
try:
pmcidobj.getBBasicMetadata()
except IDNotResolvedException:
print('Couldn\'t find in EPMC:' + citation[5])
return
metadata = pmcidobj.metadata
print("Got metadata in:" + str(time.time()-start))
if not item.articleAlreadyExists(metadata['pmcid']):
print('Item doesn\'t seem to exist. Setting metadata for: ' + metadata['pmcid'])
item.setMetaData(metadata)
print("set metadata in" + str(time.time()-start))
else:
print("{} already exists. Doing nothing".format(metadata['pmcid']))
def setISSN(self, issn):
if issn:
self.makeSimpleClaim('P14', issn)
if __name__ == '__main__':
site = pywikibot.Site("librarybase", "librarybase")
#repo = site.data_repositry()
item = JournalArticlePage(site, 'Q261')
pmcid = 'PMC3315379'
pmcidobj = getPMCID(pmcid)
pmcidobj.getBBasicMetadata()
metadata = pmcidobj.metadata
#print(item.articleAlreadyExists(metadata['pmcid']))
#print(item.authorAlreadyExists('0000-0002-1298-7653'))
if not item.articleAlreadyExists(metadata['pmcid']):
print('Setting metadata for: ' + metadata['pmcid'])
item.setMetaData(metadata)
else:
print("{} already exists".format(metadata['pmcid']))
