def addpaper( idx, citation ): start=time.time() print(citation) if citation is None: return print('trying to add {} number {}'.format(citation[5], idx)) site = pywikibot.Site("librarybase", "librarybase") item = librarybase.JournalArticlePage(site) pmcidobj = getPMCID(citation[5]) try: pmcidobj.getBBasicMetadata() except IDNotResolvedException: print('Couldn\'t find in EPMC:' + citation[5]) return metadata = pmcidobj.metadata print("Got metadata in:" + str(time.time()-start)) if not item.articleAlreadyExists(metadata['pmcid']): print('Item doesn\'t seem to exist. Setting metadata for: ' + metadata['pmcid']) item.setMetaData(metadata) print("set metadata in" + str(time.time()-start)) else: print("{} already exists. Doing nothing".format(metadata['pmcid']))
def setISSN(self, issn): if issn: self.makeSimpleClaim('P14', issn) if __name__ == '__main__': site = pywikibot.Site("librarybase", "librarybase") #repo = site.data_repositry() item = JournalArticlePage(site, 'Q261') pmcid = 'PMC3315379' pmcidobj = getPMCID(pmcid) pmcidobj.getBBasicMetadata() metadata = pmcidobj.metadata #print(item.articleAlreadyExists(metadata['pmcid'])) #print(item.authorAlreadyExists('0000-0002-1298-7653')) if not item.articleAlreadyExists(metadata['pmcid']): print('Setting metadata for: ' + metadata['pmcid']) item.setMetaData(metadata) else: print("{} already exists".format(metadata['pmcid']))