def test___snippy_third_real_record(self):
snippy_variant_record = retrieve_snippy_entry_from_test_vcf(2)
snippy_vcf = VCFFactory.create_Snippy_VCF_from_VariantRecord_and_Sample(
snippy_variant_record, "H131800734")
assert snippy_vcf.genotype == 1
assert math.isclose(snippy_vcf.genotype_confidence,
1957.94,
abs_tol=0.0001)
assert snippy_vcf.svtype == "complex"
assert snippy_vcf.coverage == 1000
def test___snippy_fails_with_genotype_0_0(self):
snippy_variant_record = retrieve_snippy_entry_from_test_vcf(5)
snippy_vcf = VCFFactory.create_Snippy_VCF_from_VariantRecord_and_Sample(
snippy_variant_record, "H131800734")
