def test___snippy_third_real_record(self): snippy_variant_record = retrieve_snippy_entry_from_test_vcf(2) snippy_vcf = VCFFactory.create_Snippy_VCF_from_VariantRecord_and_Sample( snippy_variant_record, "H131800734") assert snippy_vcf.genotype == 1 assert math.isclose(snippy_vcf.genotype_confidence, 1957.94, abs_tol=0.0001) assert snippy_vcf.svtype == "complex" assert snippy_vcf.coverage == 1000
def test___snippy_fails_with_genotype_0_0(self): snippy_variant_record = retrieve_snippy_entry_from_test_vcf(5) snippy_vcf = VCFFactory.create_Snippy_VCF_from_VariantRecord_and_Sample( snippy_variant_record, "H131800734")