def _create_report(self, onweb=True):
# generated pictures and results
df = self.run()
odof = self.factory._get_one_drug_one_feature_data(
self.drug, self.feature)
# Create the table and add it
sign = ANOVAResults(df)
html_table = sign.get_html_table(escape=False,
header=True,
index=False,
add_href=self.add_href)
self.jinja['association_table'] = html_table
# Javascript version
bx = BoxPlotsJS(odof)
self.jinja["boxplot_all_jsdata"] = bx.get_html_association()
section = ""
if self.factory.settings.include_MSI_factor:
self.jinja["boxplot_msi_jsdata"] = bx.get_html_msi()
if self.factory.settings.include_media_factor:
self.jinja["boxplot_media_jsdata"] = bx.get_html_media()
if self.factory.settings.analysis_type == 'PANCAN':
self.jinja["boxplot_tissue_jsdata"] = bx.get_html_tissue()
self.jinja['boxplots'] = section
def _create_report(self, onweb=True):
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False, header=True, index=False)
self.jinja['association_table'] = html
self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True):
# generated pictures and results
df = self.run()
odof = self.factory._get_one_drug_one_feature_data(self.drug,
self.feature)
# Create the table and add it
sign = ANOVAResults(df)
html_table = sign.get_html_table(escape=False, header=True,
index=False)
self.jinja['association_table'] = html_table
# Javascript version
bx = BoxPlotsJS(odof)
self.jinja["boxplot_all_jsdata"] = bx.get_html_association()
section = ""
if self.factory.settings.include_MSI_factor:
self.jinja["boxplot_msi_jsdata"] = bx.get_html_msi()
if self.factory.settings.include_media_factor:
self.jinja["boxplot_media_jsdata"] = bx.get_html_media()
if self.factory.settings.analysis_type == 'PANCAN':
self.jinja["boxplot_tissue_jsdata"] = bx.get_html_tissue()
self.jinja['boxplots'] = section
def _create_report(self, onweb=True):
# generated pictures and results
df = self.run()
# Create the table and add it
sign = ANOVAResults(df)
html_table = sign.get_html_table(escape=False, header=True,
index=False)
self.jinja['association_table'] = html_table
# Main boxplot always included
prefix = 'images/ODOF_all'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section = '<img alt="association {0}" src="{0}">\n'.format(tag)
if self.factory.settings.include_MSI_factor:
prefix = 'ODOF_msi'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section += '<img alt="association {0}" src="{0}">\n'.format(tag)
if self.factory.settings.analysis_type == 'PANCAN':
prefix = 'ODOF_tissue'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section += '<img alt="association {0}" src="{0}">\n'.format(tag)
self.jinja['boxplots'] = section
def _create_report(self, onweb=True):
# generated pictures and results
df = self.run()
# Create the table and add it
sign = ANOVAResults(df)
html_table = sign.get_html_table(escape=False,
header=True,
index=False)
self.jinja['association_table'] = html_table
# Main boxplot always included
prefix = 'images/ODOF_all'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section = '<img alt="association {0}" src="{0}">\n'.format(tag)
if self.factory.settings.include_MSI_factor:
prefix = 'ODOF_msi'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section += '<img alt="association {0}" src="{0}">\n'.format(tag)
if self.factory.settings.analysis_type == 'PANCAN':
prefix = 'ODOF_tissue'
tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature)
section += '<img alt="association {0}" src="{0}">\n'.format(tag)
self.jinja['boxplots'] = section
def _create_report(self, onweb=True):
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False,
header=True, index=False)
self.jinja['association_table'] = html
self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True):
self.create_pictures()
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False,
header=True, index=False)
self.jinja['association_table'] = html
# image section
self.jinja['image_filename'] = "images/volcano_{0}".format(self.feature)
def _create_report(self, onweb=True):
self.create_pictures()
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False, header=True, index=False)
self.jinja['association_table'] = html
# image section
self.jinja['image_filename'] = "images/volcano_{0}".format(
self.feature)
def _create_report(self, onweb=True):
#self.create_pictures()
# add the table
self.jinja['synonyms'] = ''
self.jinja['brand_name'] = ''
self.jinja['conc_min'] = '?'
self.jinja['conc_max'] = '?'
# Table section
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False, header=True, index=False)
self.jinja['association_table'] = html
# image section
self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True):
#self.create_pictures()
# add the table
self.jinja['synonyms'] = ''
self.jinja['brand_name'] = ''
self.jinja['conc_min'] = '?'
self.jinja['conc_max'] = '?'
# Table section
self.jinja['N_hits'] = len(self.subdf)
if len(self.subdf) > 0:
sign = ANOVAResults(self.subdf)
html = sign.get_html_table(escape=False,
header=True, index=False)
self.jinja['association_table'] = html
# image section
self.jinja['volcano_jsdata'] = self.create_pictures()
