def _create_report(self, onweb=True): # generated pictures and results df = self.run() odof = self.factory._get_one_drug_one_feature_data( self.drug, self.feature) # Create the table and add it sign = ANOVAResults(df) html_table = sign.get_html_table(escape=False, header=True, index=False, add_href=self.add_href) self.jinja['association_table'] = html_table # Javascript version bx = BoxPlotsJS(odof) self.jinja["boxplot_all_jsdata"] = bx.get_html_association() section = "" if self.factory.settings.include_MSI_factor: self.jinja["boxplot_msi_jsdata"] = bx.get_html_msi() if self.factory.settings.include_media_factor: self.jinja["boxplot_media_jsdata"] = bx.get_html_media() if self.factory.settings.analysis_type == 'PANCAN': self.jinja["boxplot_tissue_jsdata"] = bx.get_html_tissue() self.jinja['boxplots'] = section
def _create_report(self, onweb=True): self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True): # generated pictures and results df = self.run() odof = self.factory._get_one_drug_one_feature_data(self.drug, self.feature) # Create the table and add it sign = ANOVAResults(df) html_table = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html_table # Javascript version bx = BoxPlotsJS(odof) self.jinja["boxplot_all_jsdata"] = bx.get_html_association() section = "" if self.factory.settings.include_MSI_factor: self.jinja["boxplot_msi_jsdata"] = bx.get_html_msi() if self.factory.settings.include_media_factor: self.jinja["boxplot_media_jsdata"] = bx.get_html_media() if self.factory.settings.analysis_type == 'PANCAN': self.jinja["boxplot_tissue_jsdata"] = bx.get_html_tissue() self.jinja['boxplots'] = section
def _create_report(self, onweb=True): # generated pictures and results df = self.run() # Create the table and add it sign = ANOVAResults(df) html_table = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html_table # Main boxplot always included prefix = 'images/ODOF_all' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section = '<img alt="association {0}" src="{0}">\n'.format(tag) if self.factory.settings.include_MSI_factor: prefix = 'ODOF_msi' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section += '<img alt="association {0}" src="{0}">\n'.format(tag) if self.factory.settings.analysis_type == 'PANCAN': prefix = 'ODOF_tissue' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section += '<img alt="association {0}" src="{0}">\n'.format(tag) self.jinja['boxplots'] = section
def _create_report(self, onweb=True): # generated pictures and results df = self.run() # Create the table and add it sign = ANOVAResults(df) html_table = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html_table # Main boxplot always included prefix = 'images/ODOF_all' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section = '<img alt="association {0}" src="{0}">\n'.format(tag) if self.factory.settings.include_MSI_factor: prefix = 'ODOF_msi' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section += '<img alt="association {0}" src="{0}">\n'.format(tag) if self.factory.settings.analysis_type == 'PANCAN': prefix = 'ODOF_tissue' tag = "{0}_{1}____{2}.png".format(prefix, self.drug, self.feature) section += '<img alt="association {0}" src="{0}">\n'.format(tag) self.jinja['boxplots'] = section
def _create_report(self, onweb=True): self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True): self.create_pictures() self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html # image section self.jinja['image_filename'] = "images/volcano_{0}".format(self.feature)
def _create_report(self, onweb=True): self.create_pictures() self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html # image section self.jinja['image_filename'] = "images/volcano_{0}".format( self.feature)
def _create_report(self, onweb=True): #self.create_pictures() # add the table self.jinja['synonyms'] = '' self.jinja['brand_name'] = '' self.jinja['conc_min'] = '?' self.jinja['conc_max'] = '?' # Table section self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html # image section self.jinja['volcano_jsdata'] = self.create_pictures()
def _create_report(self, onweb=True): #self.create_pictures() # add the table self.jinja['synonyms'] = '' self.jinja['brand_name'] = '' self.jinja['conc_min'] = '?' self.jinja['conc_max'] = '?' # Table section self.jinja['N_hits'] = len(self.subdf) if len(self.subdf) > 0: sign = ANOVAResults(self.subdf) html = sign.get_html_table(escape=False, header=True, index=False) self.jinja['association_table'] = html # image section self.jinja['volcano_jsdata'] = self.create_pictures()