def _load_gtex_data(self):
print "Loading tissue-specific expression values"
for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene(
self.settings_module.gtex_expression_file,
self.settings_module.gtex_samples_file
):
self._db.tissue_expression.insert({
'gene_id': gene_id,
'expression_display_values': expression_array
})
def _load_gtex_data(self):
self._db.drop_collection('tissue_expression')
self._db.tissue_expression.ensure_index('gene_id')
for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene(
self.settings_module.gtex_expression_file,
self.settings_module.gtex_samples_file
):
self._db.tissue_expression.insert({
'gene_id': gene_id,
'expression_display_values': expression_array
})
def _load_gtex_data(self):
self._db.drop_collection('tissue_expression')
self._db.expression.ensure_index('gene_id')
for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene(
self.settings_module.gtex_expression_file,
self.settings_module.gtex_samples_file
):
self._db.tissue_expression.insert({
'gene_id': gene_id,
'expression_display_values': expression_array
})
