def _load_gtex_data(self): print "Loading tissue-specific expression values" for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene( self.settings_module.gtex_expression_file, self.settings_module.gtex_samples_file ): self._db.tissue_expression.insert({ 'gene_id': gene_id, 'expression_display_values': expression_array })
def _load_gtex_data(self): self._db.drop_collection('tissue_expression') self._db.tissue_expression.ensure_index('gene_id') for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene( self.settings_module.gtex_expression_file, self.settings_module.gtex_samples_file ): self._db.tissue_expression.insert({ 'gene_id': gene_id, 'expression_display_values': expression_array })
def _load_gtex_data(self): self._db.drop_collection('tissue_expression') self._db.expression.ensure_index('gene_id') for gene_id, expression_array in gene_expression.get_tissue_expression_values_by_gene( self.settings_module.gtex_expression_file, self.settings_module.gtex_samples_file ): self._db.tissue_expression.insert({ 'gene_id': gene_id, 'expression_display_values': expression_array })