"""
this is how you load from another folder
"""
sys.path.insert(0, 'files_for_submission_v2.0/MLS_MPR_files')
#from asterids import studytreelist
from ascomycota import studytreelist
taxtreefile = "tax.tree"
mlsout = "mls.test"
tgenerallogfileloc = "/home/smitty/TEMP/"
if __name__ == "__main__":
from stephen_laptop_conf import *
download = True
if download:
general_tm_utils.get_all_studies_opentreeapi(studytreelist,studyloc)
taxalist = set()
treestrings = []
for i in studytreelist:
glog = tgenerallogfileloc+i+".log"
ttfntreefn = tgenerallogfileloc+i+".tre"
tstudy_list = [i]
general_tm_utils.load_nexson(studyloc,i,javapre,treemloc,dload,glog,False,True)
fl = open(glog,"r")
fl2 = open(ttfntreefn,"w")
treestring = ""
start = False
for i in fl:
if i.strip() == "MRP":
break
if start:
"""
this is how you load from another folder
"""
sys.path.insert(0, 'files_for_submission_v2.0/MLS_MPR_files')
#from fungi import studytreelist
from plants_mls_groups import deepplants_studytreelist as studytreelist
taxtreefile = "tax.tree"
mlsout = "mls.test"
tgenerallogfileloc = "/home/smitty/TEMP/"
if __name__ == "__main__":
from stephen_laptop_conf import *
download = True
if download:
general_tm_utils.get_all_studies_opentreeapi(studytreelist,studyloc)
taxalist = set()
treestrings = []
for i in studytreelist:
glog = tgenerallogfileloc+i+".log"
ttfntreefn = tgenerallogfileloc+i+".tre"
tstudy_list = [i]
general_tm_utils.load_nexson(studyloc,i,javapre,treemloc,dload,glog,False,True)
fl = open(glog,"r")
fl2 = open(ttfntreefn,"w")
treestring = ""
start = False
for i in fl:
if i.strip() == "MRP":
break
if start:
