""" this is how you load from another folder """ sys.path.insert(0, 'files_for_submission_v2.0/MLS_MPR_files') #from asterids import studytreelist from ascomycota import studytreelist taxtreefile = "tax.tree" mlsout = "mls.test" tgenerallogfileloc = "/home/smitty/TEMP/" if __name__ == "__main__": from stephen_laptop_conf import * download = True if download: general_tm_utils.get_all_studies_opentreeapi(studytreelist,studyloc) taxalist = set() treestrings = [] for i in studytreelist: glog = tgenerallogfileloc+i+".log" ttfntreefn = tgenerallogfileloc+i+".tre" tstudy_list = [i] general_tm_utils.load_nexson(studyloc,i,javapre,treemloc,dload,glog,False,True) fl = open(glog,"r") fl2 = open(ttfntreefn,"w") treestring = "" start = False for i in fl: if i.strip() == "MRP": break if start:
""" this is how you load from another folder """ sys.path.insert(0, 'files_for_submission_v2.0/MLS_MPR_files') #from fungi import studytreelist from plants_mls_groups import deepplants_studytreelist as studytreelist taxtreefile = "tax.tree" mlsout = "mls.test" tgenerallogfileloc = "/home/smitty/TEMP/" if __name__ == "__main__": from stephen_laptop_conf import * download = True if download: general_tm_utils.get_all_studies_opentreeapi(studytreelist,studyloc) taxalist = set() treestrings = [] for i in studytreelist: glog = tgenerallogfileloc+i+".log" ttfntreefn = tgenerallogfileloc+i+".tre" tstudy_list = [i] general_tm_utils.load_nexson(studyloc,i,javapre,treemloc,dload,glog,False,True) fl = open(glog,"r") fl2 = open(ttfntreefn,"w") treestring = "" start = False for i in fl: if i.strip() == "MRP": break if start: