def __init__(self, file_path): # load params file related to the given shybrid recording params = sbio.get_params(file_path)['data'] # create a shybrid probe object probe = sbprb.Probe(params['probe']) nb_channels = probe.total_nb_channels # translate the byte ordering # TODO still ambiguous, shybrid should assume time_axis=1, since spike interface makes an assumption on the byte ordering byte_order = params['order'] if byte_order == 'C': time_axis = 1 elif byte_order == 'F': time_axis = 0 # piggyback on binary data recording extractor BinDatRecordingExtractor.__init__(self, file_path, params['fs'], nb_channels, params['dtype'], time_axis=time_axis) self = load_probe_file(self, params['probe'])
def __init__(self, file_path): # load params file related to the given shybrid recording assert self.installed, self.installation_mesg assert Path(file_path).suffix in [ ".yml", ".yaml" ], "The 'file_path' should be a yaml file!" params = sbio.get_params(file_path)['data'] file_path = Path(file_path) # create a shybrid probe object probe = sbprb.Probe(params['probe']) nb_channels = probe.total_nb_channels # translate the byte ordering byte_order = params['order'] if byte_order == 'C': time_axis = 1 elif byte_order == 'F': time_axis = 0 bin_file = file_path.parent / f"{file_path.stem}.bin" # piggyback on binary data recording extractor BinaryRecordingExtractor.__init__(self, files_path=bin_file, sampling_frequency=float( params['fs']), num_chan=nb_channels, dtype=params['dtype'], time_axis=time_axis) # load probe file probegroup = read_prb(params['probe']) self.set_probegroup(probegroup, in_place=True) self._kwargs = {'file_path': str(Path(file_path).absolute())}
def __init__(self, file_path): # load params file related to the given shybrid recording assert HAVE_SBEX, "To use the SHYBRID extractors, install shybrid: \n\n pip install shybrid\n\n" params = sbio.get_params(file_path)['data'] # create a shybrid probe object probe = sbprb.Probe(params['probe']) nb_channels = probe.total_nb_channels # translate the byte ordering # TODO still ambiguous, shybrid should assume time_axis=1, since spike interface makes an assumption on the byte ordering byte_order = params['order'] if byte_order == 'C': time_axis = 1 elif byte_order == 'F': time_axis = 0 # piggyback on binary data recording extractor BinDatRecordingExtractor.__init__(self, file_path, params['fs'], nb_channels, params['dtype'], time_axis=time_axis) self._kwargs = {'file_path': str(Path(file_path).absolute())} self = load_probe_file(self, params['probe'])